Gene detail information of Glyur000124s00011948 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G10940.2 | 2.00E-25 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
| NR | XP_004251730.1 | 7.17E-89 | PREDICTED: 36.4 kDa proline-rich protein [Solanum lycopersicum] |
| COG | YP_007067976.1 | 1.00E-13 | hypothetical protein Cal7507_4787 [Calothrix sp. PCC 7507] |
| Swissprot | tr|Q00451|PRF1_SOLLC | 5.00E-22 | 36.4 kDa proline-rich protein |
| trEMBL | tr|K4DC53|K4DC53_SOLLC | 3.00E-88 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc12g009650.1.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00124 | 113615 | 114346 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000124s00011948.1 | PF14547.1 | Hydrophob_seed | 159 | 242 | 2.00E-26 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 990.652 |
| SRR1783600 | control | 975.805 |
| SRR1783602 | moderate drought stress | 421.699 |
| SRR1811619 | moderate drought stress | 412.227 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 940.778 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 922.856 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.723 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.468 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 379.129 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 376.015 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 242.730 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 237.057 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 167.595 |
| SRR2868004 | Drought Stress (root) | 99.992 |
| SRR2967015 | Control (root) | 141.087 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 216.052 |
| SRR9715740 | Leaf | 6.846 |
| SRR9715741 | Leaf | 39.471 |
| SRR9715739 | Root | 295.224 |
| SRR9715742 | Root | 132.368 |
| SRR9715743 | Root | 153.336 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.897 |
| SRR8749028 | MeJA induced 9h | 3.308 |
| SRR8749029 | MeJA induced 9h | 2.590 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.425 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 619.002 |
| SRR8400027 | Control - Root | 817.485 |