Gene detail information of Glyur000124s00011947 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G11150.1 | 2.00E-71 | vesicle-associated membrane protein 713 |
| NR | XP_004508456.1 | 6.62E-148 | PREDICTED: vesicle-associated membrane protein 713-like [Cicer arietinum] |
| Swissprot | tr|Q9LFP1|VA713_ARATH | 1.00E-104 | Vesicle-associated membrane protein 713 |
| trEMBL | tr|G7JFD0|G7JFD0_MEDTR | 1.00E-142 | Synaptobrevin-like protein {ECO:0000313|EMBL:AES91606.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00124 | 98875 | 101239 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000124s00011947.1 | PF13774.1 | Longin | 28 | 113 | 6.70E-25 |
| Glyur000124s00011947.1 | PF00957.16 | Synaptobrevin | 157 | 231 | 3.90E-25 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.299 |
| SRR1783600 | control | 0.335 |
| SRR1783602 | moderate drought stress | 0.439 |
| SRR1811619 | moderate drought stress | 0.463 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.343 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.187 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.132 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.273 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.863 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.834 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.283 |
| SRR2868004 | Drought Stress (root) | 2.117 |
| SRR2967015 | Control (root) | 2.239 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.993 |
| SRR9715740 | Leaf | 1.204 |
| SRR9715741 | Leaf | 0.579 |
| SRR9715739 | Root | 0.493 |
| SRR9715742 | Root | 0.142 |
| SRR9715743 | Root | 0.702 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 9.159 |
| SRR8749028 | MeJA induced 9h | 5.010 |
| SRR8749029 | MeJA induced 9h | 6.394 |
| SRR8749030 | Uninduced | 7.267 |
| SRR8749031 | Uninduced | 0.945 |
| SRR8749032 | Uninduced | 1.895 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.099 |
| SRR8400027 | Control - Root | 1.358 |