Gene detail

Gene detail information of Glyur000124s00011942.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G20260.1	2.00E-132	Exostosin family protein
NR	XP_003550812.1	0	PREDICTED: LOW QUALITY PROTEIN: probable glycosyltransferase At5g20260-like [Glycine max]
Swissprot	tr\|Q3E9A4\|GLYT5_ARATH	3.00E-173	Probable glycosyltransferase At5g20260
trEMBL	tr\|G7JFD7\|G7JFD7_MEDTR	0	Exostosin family protein {ECO:0000313\|EMBL:AES91613.2}

Sequence

Transcript Sequence

>Glyur000124s00011942.1
ATGGCAGCGACCTTGATAAAGAACTCGTGCCTTGTGTTTTCCGTAACCTTCCTCATCCTTATTATGTTCCACGCTTTCGTTGCACTTAACCGAAACGACGTAGTTCTCCTTTTTCCTCCCACCAACCTCTTACCACCTGCTGCAAACAATCTCAAAACTACTACTCTTGACGCCGCAGCGGTTCCTCCTGCACCTCTGAAGCTTCCCTTCTCCTCCTCCTCTGCCTCTAATGCTACCAATACCATTGCAAAAACAAATCCCAGTGACCACAGTACTATTGCTAGCCACATCAAACTCAAAAAGAAGGGGAGTAGCAGATTACTGAGAATTGAAGAAGACTTGGCTGAAGCAAGGGCGGCTATTCGCGGAGCGATAAGAAGACGGAACTTCACATCAGAGAAGGAAGATATTTTTGTCCCCAAGGGATGCGTTTACAGAAACGCTTATGCTTTTCACCAAAGTCACATNGAGATGTTGAAGAGATTCAAAGTGTGGACTTACAAAGAAGGTGAGCCACCCTTAGTCCATGATGGGCCCATGAATTCAATTTATGGCATCGAGGGACACTTCATGGCCGAAATCGACAACAGAGTGGGCCCATTCTCGGCCCACAACCCAGACGAGGCCCATGTGTTTATGCTACCCTTAAGTGTGGCCCACATTGTGCATTACCTATACAAACCTCTCACCACCTACTCTCGGGATCAACTCATGCGGATCGTCCTTGACTATACCAACATCATAGCCCAAAGGTACCCGTACTGGAATATGAGCCAAGGGGCAGACCATTTCCTAGCCTCTTGGTTTGAGCCTCAAAGAGATGTCTCATTACCTGAAATGAACTTGCAGGGTTACAAATTGAGCTCACCAATTCCTGGCCAAGACCCAAATCGTCGTTCTATACTTGCTTTCTTCGCTGGAGGGGCTCATGGCAGGATTAGGGAAATCCTACTAAAGCATTGGAAGGAAAAAGATGATGAAGTTCAAGTGCATGAGTATCTTCCCAAGGGCCTTGACTATTACGGCCTCATGGGACAGAGCAAGTTCTGTTTGTGTCCAAGTGGCTACGAAGTGGCAAGTCCTAGATTGGTGGAGTCTATCAACACAGGATGTGTACCTGTAATTGTTTCAGATTATTATCAACTCCCCTTTAGTGATGTTCTTGATTGGAGCAAGTTTTCCTTGCATGTTCCTTCACGGAGGATAGCTGAAATCAAGACAATATTGAAAAGTGTTCCACATGCCAAGTACTTGAAATTGCATAAAAGGGTCATGAAAGTTCAAAGACATTTTGTGTTGAATCGACCGGCCAAACCGTTTGATGTGCTCCATATGATTCTTCATTCGGTGTGGCTTAGAAGGCTCAATATCAGGCTACCCCTTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00124	61828	64774	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT47

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000124s00011942.1	PF03016.10	Exostosin	160	267	2.30E-13
Glyur000124s00011942.1	PF03016.10	Exostosin	269	412	1.30E-38

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.392
SRR1783600	control	0.293
SRR1783602	moderate drought stress	0.155
SRR1811619	moderate drought stress	0.077

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.518
DRR006520	Root Summer glycyrrhizin high producing strain	1.442
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.964
DRR006524	Root Summer glycyrrhizin low producing strain	0.956
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.139
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.189

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.561
SRR2868004	Drought Stress (root)	0.410
SRR2967015	Control (root)	0.421

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.045
SRR9715740	Leaf	0.081
SRR9715741	Leaf	0.044
SRR9715739	Root	1.610
SRR9715742	Root	4.465
SRR9715743	Root	2.640

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.018
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.336
SRR8400027	Control - Root	0.345