Gene detail information of Glyur000124s00011940.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G33290.1 | 2.00E-127 | xylogalacturonan deficient 1 |
| NR | XP_003549738.1 | 0 | PREDICTED: probable glycosyltransferase At3g42180-like [Glycine max] |
| COG | YP_677520.1 | 1.00E-07 | hypothetical protein CHU_0899 [Cytophaga hutchinsonii ATCC 33406] |
| Swissprot | tr|Q94AA9|XGD1_ARATH | 6.00E-160 | Xylogalacturonan beta-1,3-xylosyltransferase |
| trEMBL | tr|I1MU43|I1MU43_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G11850.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00124 | 54129 | 59983 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT47 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000124s00011940.1 | PF03016.10 | Exostosin | 42 | 304 | 1.20E-48 |
| Glyur000124s00011940.1 | PF03016.10 | Exostosin | 488 | 758 | 2.50E-62 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 16.044 |
| SRR1783600 | control | 15.847 |
| SRR1783602 | moderate drought stress | 19.308 |
| SRR1811619 | moderate drought stress | 19.272 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 18.266 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 17.966 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 9.799 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 9.413 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 14.023 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 13.909 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.231 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.091 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 17.939 |
| SRR2868004 | Drought Stress (root) | 26.286 |
| SRR2967015 | Control (root) | 37.290 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 8.174 |
| SRR9715740 | Leaf | 7.948 |
| SRR9715741 | Leaf | 16.782 |
| SRR9715739 | Root | 2.032 |
| SRR9715742 | Root | 6.885 |
| SRR9715743 | Root | 6.315 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.553 |
| SRR8749028 | MeJA induced 9h | 4.543 |
| SRR8749029 | MeJA induced 9h | 1.564 |
| SRR8749030 | Uninduced | 2.041 |
| SRR8749031 | Uninduced | 0.644 |
| SRR8749032 | Uninduced | 1.834 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 24.021 |
| SRR8400027 | Control - Root | 22.562 |