Gene detail information of Glyur000124s00011939 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G20270.1 | 4.00E-105 | heptahelical transmembrane protein1 |
| NR | AES91625.2 | 0 | hemolysin-III-like protein [Medicago truncatula] |
| Swissprot | tr|Q93ZH9|HHP1_ARATH | 2.00E-133 | Heptahelical transmembrane protein 1 |
| trEMBL | tr|G7JFE9|G7JFE9_MEDTR | 0 | Hemolysin-III-like protein {ECO:0000313|EMBL:AES91625.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00124 | 47716 | 49885 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000124s00011939.1 | PF03006.15 | HlyIII | 88 | 356 | 1.30E-70 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.055 |
| SRR1783600 | control | 9.082 |
| SRR1783602 | moderate drought stress | 6.709 |
| SRR1811619 | moderate drought stress | 6.547 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.366 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.362 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.625 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.515 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 35.963 |
| SRR2868004 | Drought Stress (root) | 20.539 |
| SRR2967015 | Control (root) | 22.095 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 8.724 |
| SRR9715740 | Leaf | 4.098 |
| SRR9715741 | Leaf | 4.371 |
| SRR9715739 | Root | 15.009 |
| SRR9715742 | Root | 6.965 |
| SRR9715743 | Root | 9.590 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.060 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.500 |
| SRR8749031 | Uninduced | 0.723 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 49.181 |
| SRR8400027 | Control - Root | 55.572 |