Gene detail

Gene detail information of Glyur000124s00011937.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G20280.1	0	sucrose phosphate synthase 1F
NR	XP_003549735.1	0	PREDICTED: probable sucrose-phosphate synthase-like [Glycine max]
COG	YP_003529338.1	3.00E-132	sucrose-phosphate synthase [Nitrosococcus halophilus Nc 4]
Swissprot	tr\|Q43876\|SPSA_VICFA	0	Probable sucrose-phosphate synthase
trEMBL	tr\|I1MU40\|I1MU40_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA17G11820.1}

Sequence

Transcript Sequence

>Glyur000124s00011937.1
CTCTCACTCCATTTCGAGAGTTCTCTTCTCTCCCGGAATATTCTTCTTCTCCTTTGTTATTTTTTTTTTGTCAAAATTTCGCGTGACTCCTTCCTCTTCCTCTTCTTCTTGAATTCTCTTTAAAAGCACAATCATCGTGAACAAGTAGTGGCAATTCGAGAGGAACTAAGAAAAGAAAAAAAAAAAAGCGATGGCAGGAAACGATTGGTTGAACAGCTACCTGGAAGCGATTCTGGACGTTGGTCCTGGCCTCGACGATGCCAAGTCCTCTCTGCTTCTCAGAGAGAGAGGCAGGTTCAGCCCCACTCGCTACTTCGTTGAAGAGGTTATCGGTTTCGACGAGACCGATCTCCATCGCTCTTGGGTTCGGGCTTCTTCCTCAAGGAGTCCTCAGGAAAGGAACACTAGATTGGAGAACATGTGTTGGCGGATTTGGAACCTTGCTCGTCAGAAGAAGCAGCTCGAGAGTGAGACGTTGCAGAGAGTGAACAGGCGTCGACTCGAACGCGAGAGAGGGCGCAGGGAAGCTACTGCTGATATGTCTGAGGACTTGTCCGAAGGAGAGAAAGGAGATCCGGTGAGTGATGTTTCTGCTCACGGCGGCGACTCCGGTAGAGCCAGGTTGCCCAGAATCAGTTCCGCCGATGCTATGGAGATGTGGGCTAAGAGTCAGAAAGGCAAGAAGCTCTACATTGTACTCATAAGCATTCATGGCCTGATACGAGGTGAGAATATGGAGCTGGGGCGTGATTCTGATACTGGTGGTCAGGTTAAGTATGTGGTGGAACTTGCAAGGGCCTTGGGATCAATGCCGGGAGTTTATCGGGTTGATTTACTGACTAGGCAAGTCTCGGCACCAGGGGTAGATTGGAGTTATGGGGAACCGACGGAAATGTTGAGCCCAAGAAACACTGATGAGTTTGGAGATGACATGGGAGAGAGCAGTGGTGCTTATATAATTCGTATTCCCTTTGGTCCAAGAAATAAGTATATTCCAAAAGAAAATCTCTGGCCCTACATTTCTGAGTTTGTTGATGGAGCACTTAGCCACATCATACAGATGTCAAAGGCTCTTGGGGAGCAAATTGGCAGTGGGCATGCTGTCTGGCCAGTTGCCATCCACGGGCATTATGCGGATGCAGGTGACTCTGCTGCTCTTCTATCTGGTGCCTTAAATGTTCCGATGCTTTTTACTGGCCACTCGCTTGGTCGAGATAAATTGGAACAACTCTTAAAGCAAGGCCGACTATCAAGGGATGAAATAAACACAACTTACAAGATTATGCGTAGGATAGAAGCTGAAGAATTAACCCTTGATGGTTCTGAAATAGTCATAACAAGCACTAGACAGGAAATAGAAGAACAATGGCGCTTGTATGATGGTTTTGATCCAGTATTGGAGCGTAAACTACGAGCAAGGATCAGGCGTAATGTGAGCTGTTATGGTAGATTCATGCCTCGCATGGCAATAATTCCACCTGGTATGGAGTTCCATCACATTGTTCCACTAGATGGTGATATAGAAGGTGAACTGGAAGGGAACTTTGACCATCCCGCCCCCCAAGATCCACCTATTTGGTCCGAGATAATGCGCTTCTTTACCAACCCTCGCAAGCCTATGATACTTGCTCTTGCTAGACCGGATCCGAAAAAGAACATCACAACTTTGGTGAAAGCATTTGGAGAATGCCGTCCTCTGCGAGAGCTTGCTAACCTCACATTAATTATGGGTAACCGAGACGGAATTGATGAAATGTCAAGCACAAATGCTTCTGTTCTTCTCTCAGTACTTAAGCTGATTGACAAGTATGATCTATANGGGCAAGTGGCGTATCCTAAACACCACAAACAATCTGATGTTCCTGACATATATCGTCTAGCAGCAAAGACAAAGGGTGTTTTCATTAATCCTGCCTTCATTGAGCCGTTTGGTCTTACCTTAATTGAGGCAGCTGCTTATGGTTTGCCAATGGTTGCTACAAAAAATGGAGGTCCTGTTGACATTCATCGGGTACTTGACAACGGTCTGCTTGTGGATCCCCATGATCAGCAGTCTATTGCAGATGCTCTTTTGAAGCTTGTTAGCAACAAGCAACTTTGGGCAAAATGTAGGCAGAATGGGTTGAAGAATATTCATTTATTTTCATGGCCTGAACATTGTAAGAATTACCTGTCTAAAATAGCNACTTGCAAGCCAAGGCATCCACAATGGCAGCGAAGTGAGGATGGAGGTGAAAGTTCAGAATCAGAATCACCTGGGGATTCCTTGAGAGATATACAGGACTTATCTCTTAACCTGAAGTTTTCATTGGATGGAGAGAGGAGTGGGGATAGTGGAAACGATAATTCTTTGGATCCCGATGGAAATGCAGCTGATAGAAGTGCAAGATTAGAGAATGCTGTTTTGTCATGGTCAAAGGGCATCTCTAAGGACATACGCAGGGGTGGGGCTGCTGAAAAGTCTGATCAAAATTCAAATGCTGGTAAATTTCCGCCATTGAGGAGAAGGAATCATCTATTTGTCATTGCCGTGGATTGTGATACCATTTCAGATCTTTGTGAAACGACTAAAGCAATCTTTGAGTCTGTTGGAAAGGAGAGGGCTGAAGGCTCTGTAGGGTTCATATTGTCAACATCATTAACAATATCTGAGATACAGTCATTTCTGATCTCAGGTGGCTTGAGTCCCAGCGATTTTGATGCTTATATTTGCAACAGTGGCAGTGATCTCTACTATCCATCCCTCAATCCTGAAGATCGTCCATTTGTGGGTGACTTGTATTACCACTCACACATTGAATACCGTTGGGGTGGAGAAGGGTTGAGGAAGACTTTAATACGCTGGGCATCTTCAATCACTGAAAAGAAGGGTGAGAATGATGAGCAAATTGTGAGTCCTTCTGAACAGCTTTCTACTGACTACTGTTACACTTTCAAAGTGCGAAAGCCAGGAATGGCTCCCCCTGTGAAGGAGCTTCGTAAGTTAGTGAGGATCCAAGCTCTGCGTTGCCATCCTATATATTGTCAAAATGGGACAAGACTGAATGTAATTCCAGTACTGGCATCTCGTTCCCAAGCCCTCAGATACCTATACGTTCGATGGGGTTTTGAACTGTCAAAGATGGTGGTGTTTGTTGGAGAATGTGGTGACACAGATTACGAAGGACTGGTTGGTGGCCTACACAAAAGTGTGATATTGAAGGGAGTCGGAAGCAGTGCAATAAGTCAACTCCATAATAACAGAAACTATCCTCTTTCAGATGTCATGCCATTAGACAGCCCCAACATCGTTGAGGCAACTGAGGGGAGTAGCANTGCTGATATCCAGGCTTTGCTAGAAAAAGTGGGATATCTCACGGGATGAAAGTTATGCCTCTGTTTGTCTTCTGTGAAACACTGAAAACCTACTTCTGAGAATCTGACATTTATCCACAATGTTCATACAGCTTTCTTCCTCCTCCTCCTTCATGTTACTCCTATAATAATCCTCTTCATCACAACCTTGCCCCACGAAGCATATTTTCCTCGTGTTCCACTTATCTGCTCGTTGGTTTTGTATCTCTACATATTACATTTTTAATAAAAGGCCAGTTCTCATTTCTGTCTGCATGCCTTGTTTCTTTTTTTGTCGGCCTTTCTCGTGTTCACAATATCGCTGGGAGTCAAACTTCCTCTTTTACTCGACATACTCTTCTTTTCCCTTTAGGAGCGTAAACAAATCTATAAATAAGGATCACGGAGTTGGAAATCAACAACGAGAACACTGGAGATTCCAGAACCAAGAGTATAGGAGATTCGGTTCAGGTCAATAATGCTAGAGCTTTATGAATCATAAAGAAACCAGTTGGTTTCTACTCGAACAAGGTATATTGCCATGGATGTCATATACATACATTTTTGTTTTGTCTTCTTGTGGCATTCTTGTTCTTGGTCACTAATACAAGTGACCACCATATAATTATTCTATTTCTTTTGATGTCAGAATCTAATTTGATATGTTTCATTCACTGGAATTCAATTGTGTGTTTTCGGTTACTCAGTTGAGTTTTCTNAAGTTATGTACAACCTATATGTCTTGGATTTCTATACGCAAATGAAAAAAATATTGTTTCTCAAGTCGCTTTTAGATGAAACCATATCCTTTTTCCCTTCACCAAATGGGAATCGGGACGC

Protein Sequence

>Glyur000124s00011937.1
MAGNDWLNSYLEAILDVGPGLDDAKSSLLLRERGRFSPTRYFVEEVIGFDETDLHRSWVRASSSRSPQERNTRLENMCWRIWNLARQKKQLESETLQRVNRRRLERERGRREATADMSEDLSEGEKGDPVSDVSAHGGDSGRARLPRISSADAMEMWAKSQKGKKLYIVLISIHGLIRGENMELGRDSDTGGQVKYVVELARALGSMPGVYRVDLLTRQVSAPGVDWSYGEPTEMLSPRNTDEFGDDMGESSGAYIIRIPFGPRNKYIPKENLWPYISEFVDGALSHIIQMSKALGEQIGSGHAVWPVAIHGHYADAGDSAALLSGALNVPMLFTGHSLGRDKLEQLLKQGRLSRDEINTTYKIMRRIEAEELTLDGSEIVITSTRQEIEEQWRLYDGFDPVLERKLRARIRRNVSCYGRFMPRMAIIPPGMEFHHIVPLDGDIEGELEGNFDHPAPQDPPIWSEIMRFFTNPRKPMILALARPDPKKNITTLVKAFGECRPLRELANLTLIMGNRDGIDEMSSTNASVLLSVLKLIDKYDLXGQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAYGLPMVATKNGGPVDIHRVLDNGLLVDPHDQQSIADALLKLVSNKQLWAKCRQNGLKNIHLFSWPEHCKNYLSKIATCKPRHPQWQRSEDGGESSESESPGDSLRDIQDLSLNLKFSLDGERSGDSGNDNSLDPDGNAADRSARLENAVLSWSKGISKDIRRGGAAEKSDQNSNAGKFPPLRRRNHLFVIAVDCDTISDLCETTKAIFESVGKERAEGSVGFILSTSLTISEIQSFLISGGLSPSDFDAYICNSGSDLYYPSLNPEDRPFVGDLYYHSHIEYRWGGEGLRKTLIRWASSITEKKGENDEQIVSPSEQLSTDYCYTFKVRKPGMAPPVKELRKLVRIQALRCHPIYCQNGTRLNVIPVLASRSQALRYLYVRWGFELSKMVVFVGECGDTDYEGLVGGLHKSVILKGVGSSAISQLHNNRNYPLSDVMPLDSPNIVEATEGSSXADIQALLEKVGYLTG

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00124	34154	41833	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00696	E2.4.1.14	EC:2.4.1.14	Starch and sucrose metabolism	map00500

Gene Ontology

biological_process

GO:0005985 sucrose metabolic process

GO:0009058 biosynthetic process

molecular_function
GO:0046524 sucrose-phosphate synthase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000124s00011937.1	PF13579.1	Glyco_trans_4_4	191	391	1.10E-06
Glyur000124s00011937.1	PF00534.15	Glycos_transf_1	470	646	7.90E-27
Glyur000124s00011937.1	PF05116.8	S6PP	791	1004	8.10E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	34.159
SRR1783600	control	34.435
SRR1783602	moderate drought stress	37.948
SRR1811619	moderate drought stress	37.872

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	36.211
DRR006520	Root Summer glycyrrhizin high producing strain	35.942
DRR006521	Root Winter glycyrrhizin high producing strain	48.075
DRR006522	Root Winter glycyrrhizin high producing strain	46.867
DRR006523	Root Summer glycyrrhizin low producing strain	30.503
DRR006524	Root Summer glycyrrhizin low producing strain	29.554
DRR006525	Leaf Summer glycyrrhizin high producing strain	24.140
DRR006526	Leaf Summer glycyrrhizin high producing strain	23.816

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	46.947
SRR2868004	Drought Stress (root)	50.313
SRR2967015	Control (root)	42.606

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	22.332
SRR9715740	Leaf	26.180
SRR9715741	Leaf	29.376
SRR9715739	Root	22.887
SRR9715742	Root	46.047
SRR9715743	Root	39.056

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	10.800
SRR8749028	MeJA induced 9h	14.742
SRR8749029	MeJA induced 9h	9.004
SRR8749030	Uninduced	6.030
SRR8749031	Uninduced	3.313
SRR8749032	Uninduced	3.434

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	48.866
SRR8400027	Control - Root	49.074