Gene detail

Gene detail information of Glyur000124s00011932

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G33280.1	0	Voltage-gated chloride channel family protein
NR	XP_004508447.1	0	PREDICTED: putative chloride channel-like protein CLC-g-like [Cicer arietinum]
COG	YP_007081835.1	3.00E-28	chloride channel protein EriC [Pleurocapsa sp. PCC 7327]
Swissprot	tr\|P60300\|CLCG_ARATH	0	Putative chloride channel-like protein CLC-g
trEMBL	tr\|G7JFF4\|G7JFF4_MEDTR	0	Chloride channel protein {ECO:0000256\|RuleBase:RU361221}

Sequence

Transcript Sequence

>Glyur000124s00011932.1
CCTTATTCCACGCCACGCCACTCCACAGTCCACTCCAGATGCGTTTGTTGTGGGAAATTTCCTCATTCGACCTTTACTGCAGAGTAACAGAACAGTAACACACTCTCCTCCTTTTCTCGTCTCCCCTCGCTGACTGGTTGGTATTTTTGAAACTGTCAACTTCAGGAGCTGCTCGATGCTTCAAACTTCAAAAACACACTCACACCTGTCACTACTACCGACTAGGTTGCTCTCTCTGTCATGTCCAGAAACCACCTCTTATCTAATGGCGACTCNGAGTCTCGCCTTCGCCAACCCTTACTGTCTTCTCAAAGATCCATTCTCAACTCCACTTCCCAGGTTGCCATCGTTGGTGCCAATGTCTGCCCTATTGAGAGCCTCGACTACGAGATTTTCGAGAACGAGTTCTTCAAGCAGGATTGGAGGAGCAGAGGGGTGGTTCAGATATTCCAGTACATATGTATGAAGTGGCTACTGTGCTCTCTAATTGGCACTATTGTTGGCTTTATCGGGTTTTGCAACAATCTTGCTGTTGAGAATCTCGCTGGTGTGAAGTTTGTCATCACTTCCAATATGATGTTGGAGAGGAGGTTTCTGTTGGCCTTTGTAATATTTTTTGCTTCAAATTTGGGTCTCACGCTTTTTACCTCTATAATAACGGCTTTGATGGCACCTACTGCTGCCGGTTCAGGTATACCAGAGGTGAAGGCTTACCTAAATGGCGTAGATGCACCTGGAATATTTACTGTACAAACTCTGTTTGTTAAGATTATTGGAAGCATTACGGCAGTGTCGTCATCTCTTCTTGTTGGGAAGGCAGGGCCTATGGTGCATACAGGTGCATGTGTGGCAGCATTGTTGGGTCAAGGTGGGTCAACAAGATGTGGATTGACATGGAAATGGTTACGATTTTTTAAGAATGACCGTGATCAACGAGATCTAATAATATGTGGATCAGCAGCTGGGATGGCTGCTGCTTTCCGTGCCCCTGTTGGTGGGGTGTTGTTTGCTCTTGAAGAGATGGCATCTTGGTGGAGAACTGCCCTTCTGTGGAGAGCTTTCTTCACAACAGCAATAGTTGCAATTTTCCTTCGCGCTATGATTGATGTATGTTTGAGTGGTAAATGTGGATTATTCGGCAAAGGGGGNCTGATAATGTTTGATGCTTATTCAGCAAGTATCTCATATCATTTGGCAGCTGTTCCTCCCGTGTTTATTCTTGCAGTTGTAGGGGGGTTACTTGGAAGCTTATTTAATTTTATGACNAACAAAGTTCTTCGCATATACAATGTTATCAACGAGAAAGGCATCATTTGGAAAATTTTGCTTGCTTGTTTGATCTCCATTTTTACATCCTGTCTTCTTTTTGGATTGCCATGGTTTGCATCTTGCCGACCTTGTCCACCTGATGCAGTTGAGCCTTGTCCTACAATTGGTCGGTCTGGTATCTACAAGAAATTCCAATGCCCTCCTAACCACTATAATGGTCTTGCCAGCCTCATATTTAACACAAATGATGATGCTATCAGAAATCTATTTAGCACGAACACCGACAACGAGTTCTTGTTTTCATCAACATTCATCTTTTTCATCACATGCTATTTTTTAACTGTTTTTAGCTGTGGAATCGTTGCCCCTGCCGGTCTTTTTGTGCCAATTATTGTGACTGGTGCATCTTACGGACGCATGGTTGGAATATTGGTTGGCAAACAAACCAATCTTAGCCATGGCCTTTATGCTGTACTTGGTGCTGCTTCCTTTCTTGGTGGTTCTATGAGGACGACGGTTTCTCTGTGTGTAATTATGCTAGAACTGACCAACAACTTGTTATTGCTACCCCTAATGATGATGGTGCTTTTGGTATCTAAGACTGTAGCAGATCTTTTCAATGCAAATATATATGACCTTATAATGAAAGCCAAGGGTTTTCCTTATTTAGAAACTCATGCTGAACCATACATGAGGCAGCTAACAGTAGGTGATGTAGTCACAGGCCCACTCCAGATGTTCAATGGCATCGAGAAAGTCCGCAACATAGTGTTTGTCCTCAAAACTACAGCACACAATGGTTTTCCTGTTATTGATGAGCCTCCACTTTGTGAAACTCCAGTTTTATTCGGTATAATCCTTCGCCACCATCTCCTCACGTTGTTAAAGAAGAAAGCTTTCTTGTCTGCGCCTATGNCAATGAGTCACGATGTCTTGAAACAGTTTTCGGCAGATGATTTTGCAAAGAAGGGTTCGAGCAAAGGTGTAAAGATTGAGGATATACGGTTAACGGATGAAGAGATGGACATGTTCATTGATCTACATCCTTTCACTAATGCCTCGCCTTACACTGTTGTGGAAACAATGTCACTGGGGAAGGCCCTTACACTTTTTCGAGAGGTTGGTTTAAGGCACTTGCTAGTCATACCCAAGATCCCTGGTAGATCACCCGTTGTGGGTATACTGACACGGCACGATTTCACGCCAGAGCATATATTGGGTACGCATCCTTTGCTGGTAAGAAGCAGGTGGAAAAGATTAAGATTTTGGCAATCTTTTCTGGAAAAAATTATTTCGGGCATGCAGTGATAGTGTTGCAAAAGGCTTCACACATTGTTCATGAGACCAAAAAAAAAATCAATCAAATTTTTATACAATGAGCTCACTGTCCTGTCAGTTATTGCTCCACGTTGTTAAACTCAGTATACATTGACCAAAAAAAAAACTCAGTATACCAAAATGCTTCCCATGCAATCAAGGCTGTGGCTGTGCTGTGCTTGGATATGAATGGTGAGGAATTAGAACGAAGTGGATTAGGATGGAATTTTTTTTTAGATTACATTGTTTGAATAATTCTTTAAAATAAGATGAGATGAAGTAGAAGGAGATGGAGTGCATTCCATTTTTATCCAAGAGGGAGTTCACCTTTTTCTTTTTCCTCCAAGCTAGTGGGTATGGGATGGAATCAATTTTTCTTTTTCATTCCATTATAAATAATATTCAAATAATAAAATAGGTTTTATTCTATTTCGTTTTATTGTCATGTATTCAGTTTTTTTTTTTGGGTCCAACACATGTATTCAGTTTTGATTTGAGTATATATGCGGCTGCCTACTTAAGGGCTTCTTAGTCAGAAATAGTTTGTGACTGGATTCGCCGAACATTATATTGCAACCATTTACAATTTCCTAGTATCGCCCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00124	4311	9562	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006821 chloride transport

GO:0055085 transmembrane transport

cellular_component
GO:0016020 membrane

molecular_function

GO:0005216 ion channel activity

GO:0005247 voltage-gated chloride channel activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000124s00011932.1	PF00654.15	Voltage_CLC	133	547	5.10E-87
Glyur000124s00011932.1	PF00571.23	CBS	697	742	0.0015

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.767
SRR1783600	control	8.758
SRR1783602	moderate drought stress	6.207
SRR1811619	moderate drought stress	6.262

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.707
DRR006520	Root Summer glycyrrhizin high producing strain	10.357
DRR006521	Root Winter glycyrrhizin high producing strain	2.047
DRR006522	Root Winter glycyrrhizin high producing strain	1.944
DRR006523	Root Summer glycyrrhizin low producing strain	15.267
DRR006524	Root Summer glycyrrhizin low producing strain	15.534
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.657
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.798

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.977
SRR2868004	Drought Stress (root)	7.335
SRR2967015	Control (root)	8.001

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.833
SRR9715740	Leaf	8.305
SRR9715741	Leaf	4.824
SRR9715739	Root	4.503
SRR9715742	Root	16.496
SRR9715743	Root	14.744

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.409
SRR8749028	MeJA induced 9h	1.249
SRR8749029	MeJA induced 9h	0.283
SRR8749030	Uninduced	0.712
SRR8749031	Uninduced	0.081
SRR8749032	Uninduced	0.011

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.238
SRR8400027	Control - Root	11.588