Gene detail information of Glyur000123s00008465.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G46130.1 | 2.00E-58 | myb domain protein 48 |
| NR | XP_003606618.1 | 5.99E-109 | MYB transcription factor [Medicago truncatula] |
| Swissprot | tr|Q9LX82|MYB48_ARATH | 3.00E-77 | Transcription factor MYB48 |
| trEMBL | tr|G7JTP3|G7JTP3_MEDTR | 2.00E-109 | Myb transcription factor {ECO:0000313|EMBL:AES88815.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00123 | 325095 | 326297 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | MYB |
| EAR motif-containing Proteins | MYB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000123s00008465.1 | PF00249.26 | Myb_DNA-binding | 23 | 70 | 2.20E-12 |
| Glyur000123s00008465.1 | PF00249.26 | Myb_DNA-binding | 76 | 121 | 3.00E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 47.188 |
| SRR1783600 | control | 47.144 |
| SRR1783602 | moderate drought stress | 131.056 |
| SRR1811619 | moderate drought stress | 130.600 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 20.129 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 19.848 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 19.608 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 20.128 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 21.798 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 22.656 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.850 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.844 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 103.939 |
| SRR2868004 | Drought Stress (root) | 173.752 |
| SRR2967015 | Control (root) | 156.999 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.643 |
| SRR9715740 | Leaf | 16.713 |
| SRR9715741 | Leaf | 38.131 |
| SRR9715739 | Root | 4.055 |
| SRR9715742 | Root | 16.752 |
| SRR9715743 | Root | 14.808 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.644 |
| SRR8749028 | MeJA induced 9h | 8.132 |
| SRR8749029 | MeJA induced 9h | 2.457 |
| SRR8749030 | Uninduced | 0.110 |
| SRR8749031 | Uninduced | 0.022 |
| SRR8749032 | Uninduced | 0.089 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 87.195 |
| SRR8400027 | Control - Root | 35.802 |