Gene detail information of Glyur000123s00008462 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G59790.1 | 2.00E-102 | Domain of unknown function (DUF966) |
| NR | KHN32101.1 | 0 | hypothetical protein glysoja_028896 [Glycine soja] |
| Swissprot | tr|Q9LX14|UFC_ARATH | 8.00E-31 | Protein UPSTREAM OF FLC |
| trEMBL | tr|I1LQT5|I1LQT5_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G07100.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00123 | 303204 | 306776 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000123s00008462.1 | PF06136.8 | DUF966 | 46 | 101 | 2.20E-33 |
| Glyur000123s00008462.1 | PF06136.8 | DUF966 | 132 | 423 | 1.80E-65 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.361 |
| SRR1783600 | control | 1.392 |
| SRR1783602 | moderate drought stress | 2.044 |
| SRR1811619 | moderate drought stress | 2.003 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.188 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.240 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.536 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.624 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.086 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.176 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.379 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.471 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.080 |
| SRR2868004 | Drought Stress (root) | 3.944 |
| SRR2967015 | Control (root) | 3.618 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 11.704 |
| SRR9715740 | Leaf | 1.217 |
| SRR9715741 | Leaf | 3.613 |
| SRR9715739 | Root | 2.783 |
| SRR9715742 | Root | 1.753 |
| SRR9715743 | Root | 2.227 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 43.675 |
| SRR8749028 | MeJA induced 9h | 9.458 |
| SRR8749029 | MeJA induced 9h | 17.192 |
| SRR8749030 | Uninduced | 0.568 |
| SRR8749031 | Uninduced | 0.195 |
| SRR8749032 | Uninduced | 0.377 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.144 |
| SRR8400027 | Control - Root | 3.761 |