Gene detail information of Glyur000123s00008461 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G09510.1 | 3.00E-14 | Ribonuclease H-like superfamily protein |
| NR | XP_008240491.1 | 1.92E-23 | PREDICTED: uncharacterized protein LOC103338992 [Prunus mume] |
| trEMBL | tr|M5VWW4|M5VWW4_PRUPE | 9.00E-23 | Uncharacterized protein {ECO:0000313|EMBL:EMJ01428.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00123 | 300505 | 302266 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000123s00008461.1 | PF13456.1 | RVT_3 | 158 | 241 | 1.40E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.161 |
| SRR1783600 | control | 3.275 |
| SRR1783602 | moderate drought stress | 5.549 |
| SRR1811619 | moderate drought stress | 6.224 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.871 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.869 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.264 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.163 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.154 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.693 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.543 |
| SRR2868004 | Drought Stress (root) | 3.937 |
| SRR2967015 | Control (root) | 6.259 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.745 |
| SRR9715740 | Leaf | 7.101 |
| SRR9715741 | Leaf | 4.564 |
| SRR9715739 | Root | 2.968 |
| SRR9715742 | Root | 3.379 |
| SRR9715743 | Root | 3.128 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.863 |
| SRR8749028 | MeJA induced 9h | 0.110 |
| SRR8749029 | MeJA induced 9h | 0.603 |
| SRR8749030 | Uninduced | 0.636 |
| SRR8749031 | Uninduced | 0.455 |
| SRR8749032 | Uninduced | 0.061 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 7.400 |
| SRR8400027 | Control - Root | 8.422 |