Gene detail information of Glyur000123s00008456 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G46080.1 | 3.00E-23 | C2H2-type zinc finger family protein |
| NR | KHN21982.1 | 3.73E-41 | Zinc finger protein ZAT8 [Glycine soja] |
| Swissprot | tr|Q9LX85|ZAT8_ARATH | 2.00E-28 | Zinc finger protein ZAT8 |
| trEMBL | tr|I1LK59|I1LK59_SOYBN | 9.00E-41 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G15140.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00123 | 276641 | 277090 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2H2 |
| EAR motif-containing Proteins | C2H2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000123s00008456.1 | PF13912.1 | zf-C2H2_6 | 46 | 70 | 3.50E-06 |
| Glyur000123s00008456.1 | PF13912.1 | zf-C2H2_6 | 91 | 115 | 2.20E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.077 |
| SRR1783600 | control | 1.307 |
| SRR1783602 | moderate drought stress | 0.506 |
| SRR1811619 | moderate drought stress | 0.521 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.466 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.475 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.138 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.210 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.736 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.229 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.712 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.236 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.213 |
| SRR2868004 | Drought Stress (root) | 0.192 |
| SRR2967015 | Control (root) | 1.354 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.883 |
| SRR9715740 | Leaf | 2.236 |
| SRR9715741 | Leaf | 2.843 |
| SRR9715739 | Root | 10.508 |
| SRR9715742 | Root | 1.592 |
| SRR9715743 | Root | 6.292 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 159.935 |
| SRR8749028 | MeJA induced 9h | 132.756 |
| SRR8749029 | MeJA induced 9h | 216.426 |
| SRR8749030 | Uninduced | 35.182 |
| SRR8749031 | Uninduced | 10.322 |
| SRR8749032 | Uninduced | 36.407 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.335 |
| SRR8400027 | Control - Root | 0.609 |