Gene detail information of Glyur000123s00008448


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G07790.12.00E-48Histone superfamily protein
NRXP_007206090.16.86E-94hypothetical protein PRUPE_ppa012932mg [Prunus persica]
Swissprottr|Q1S9I9|H2B1_MEDTR3.00E-89Probable histone H2B.1
trEMBLtr|M5WKF6|M5WKF6_PRUPE3.00E-94Histone H2B {ECO:0000256|RuleBase:RU000451}

Sequence

Transcript Sequence
Protein Sequence


Location information (JBrowse)

ScaffoldStartEndStrand
Scaffold00123258430258879-


Gene family

Gene familysubfamily
----


KEGG pathway

KOEnzymeEnzyme IDpathwaymapID
----------


Gene Ontology

cellular_component

GO:0000786  nucleosome


molecular_function

GO:0003677  DNA binding

GO:0046982  protein heterodimerization activity



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000123s00008448.1PF00125.19Histone581252.50E-23


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control87.202
SRR1783600control84.803
SRR1783602moderate drought stress97.644
SRR1811619moderate drought stress93.017

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain238.104
DRR006520Root Summer glycyrrhizin high producing strain239.312
DRR006521Root Winter glycyrrhizin high producing strain116.576
DRR006522Root Winter glycyrrhizin high producing strain119.464
DRR006523Root Summer glycyrrhizin low producing strain344.574
DRR006524Root Summer glycyrrhizin low producing strain351.884
DRR006525Leaf Summer glycyrrhizin high producing strain120.627
DRR006526Leaf Summer glycyrrhizin high producing strain121.872

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress (root)393.980
SRR2868004Drought Stress (root)288.023
SRR2967015Control (root)304.183

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leaf383.977
SRR9715740Leaf267.116
SRR9715741Leaf367.838
SRR9715739Root309.423
SRR9715742Root250.485
SRR9715743Root265.458

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h724.777
SRR8749028MeJA induced 9h313.747
SRR8749029MeJA induced 9h580.259
SRR8749030Uninduced187.947
SRR8749031Uninduced220.972
SRR8749032Uninduced336.239

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment - Root344.221
SRR8400027Control - Root394.152

© 2021 Resource Institute for Chinese & Ethnic Materia Medica, Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved