Gene detail information of Glyur000123s00008447


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G45980.15.00E-48Histone superfamily protein
NRXP_007206090.17.74E-93hypothetical protein PRUPE_ppa012932mg [Prunus persica]
Swissprottr|Q1S9I9|H2B1_MEDTR4.00E-88Probable histone H2B.1
trEMBLtr|M5WKF6|M5WKF6_PRUPE3.00E-93Histone H2B {ECO:0000256|RuleBase:RU000451}

Sequence

Transcript Sequence
Protein Sequence


Location information (JBrowse)

ScaffoldStartEndStrand
Scaffold00123254640255089-


Gene family

Gene familysubfamily
----


KEGG pathway

KOEnzymeEnzyme IDpathwaymapID
----------


Gene Ontology

cellular_component

GO:0000786  nucleosome


molecular_function

GO:0003677  DNA binding

GO:0046982  protein heterodimerization activity



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000123s00008447.1PF00125.19Histone581256.90E-23


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control79.707
SRR1783600control79.341
SRR1783602moderate drought stress85.279
SRR1811619moderate drought stress85.500

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain229.665
DRR006520Root Summer glycyrrhizin high producing strain227.121
DRR006521Root Winter glycyrrhizin high producing strain368.590
DRR006522Root Winter glycyrrhizin high producing strain361.367
DRR006523Root Summer glycyrrhizin low producing strain315.415
DRR006524Root Summer glycyrrhizin low producing strain319.567
DRR006525Leaf Summer glycyrrhizin high producing strain167.265
DRR006526Leaf Summer glycyrrhizin high producing strain170.620

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress (root)437.705
SRR2868004Drought Stress (root)317.200
SRR2967015Control (root)369.323

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leaf184.936
SRR9715740Leaf107.097
SRR9715741Leaf134.363
SRR9715739Root132.435
SRR9715742Root164.759
SRR9715743Root150.727

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h881.277
SRR8749028MeJA induced 9h480.583
SRR8749029MeJA induced 9h869.408
SRR8749030Uninduced269.497
SRR8749031Uninduced260.641
SRR8749032Uninduced289.028

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment - Root394.025
SRR8400027Control - Root334.168

© 2021 Resource Institute for Chinese & Ethnic Materia Medica, Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved