Gene detail

Gene detail information of Glyur000123s00008445

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G59950.5	2.00E-48	RNA-binding (RRM/RBD/RNP motifs) family protein
NR	XP_004505883.1	9.75E-132	PREDICTED: THO complex subunit 4-like [Cicer arietinum]
COG	YP_002015909.1	6.00E-09	RNP-1 like RNA-binding protein [Prosthecochloris aestuarii DSM 271]
Swissprot	tr\|Q8L773\|THO4A_ARATH	5.00E-72	THO complex subunit 4A
trEMBL	tr\|I1LK48\|I1LK48_SOYBN	2.00E-126	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA11G15040.4}

Sequence

Transcript Sequence

>Glyur000123s00008445.1
TTGGCGTCGCCCGGACTCGAACCGGAGACCTTCAGTGTGTTAGACTGACGTGATAACCAACTACACCACGACACCAGCTTCTACGTCGGAGCCTGAAGTTATATAAAATAGTTAACTACTGAGAGACTGTGTTATCCATAGCAATTGCAGTATAGTTACGCTGCATATTTTTATCTGCTTTTCTTTCCCTGTCACGAGCCTTCGGAACCCTAAACTGCCTTGCTCGCTCACTCTCATATCCTTTCTCTGCTTCACCTCGCTCTCGTCGTCGAAGGTAAAAGCTTAATACGCAAAACATGTCAGCATCTCTGGATATGACCCTCGACGACCTCATCAAGAGCAACAAAAAGCCTGGATCTGGAAACCCCAGGGGCCGCGCCCGACCCGGACCCGGCCCCACTCGCCGCTTCCCCAACCGAGCCGCCACCCGCGCCGCACCCTATGCCGCCCCTCAGGCGCCGGAGTCGACGTGGCAGCACGATATGTATGCAGATCAGCACGTGGCTGTGGCGGCGTACCCAGCTCAAGGTGGTCGTGCTCCTTCCATAGAAACTGGGACCAAGCTCTACATTTCCAATTTGGATTACGGTGTTTCCAACGATGATATTAAGGAATTGTTTTCTGAAGTTGGTGATTTGAAGCGGCATGGTGTGCATTATGACAGGAGTGGCAGATCAAAGGGTACAGCAGAAGTGGTCTTCTCACGTCGAGTTGATGCTGTAGCTGCTGTNAAGAGATACAACAATGTTCAACTTGATGGGAAACCAATGAAGATAGAGATTGTTGGAACCAACATTTCTACACCTGGTGTACCTCCTGTTACTAATGGAGCCATTGGAAATTCAGCTGGAGTTCCTCAAAGTGGACAAGGAAGAGGCGGGGCATTTCGAAGGCCAGGAGGAAGGCTAGGAGGTAGAGGGCAGGGCATTCNAAGGAGTCGAGGACGTGGAAGAGGTCNCGGTGGAGGTCGTGAGTCTCGTGACGAAAAGGTATCTGCAGATGATCTTGATGCTGACTTAGAGAAGTATCATGCAGAGGCAATGCAATTAAACTGAAGGAGTTATCTAGTTCTATTTTCTAGCTTTTACTTCTATGGTTATTAGGGCAGCATGGGGATNGATCACAACGTGTTTATGTATTCGCAACCCTGCATTTTAGGGAAAGGGGAAGAATCTCTTGAATGGAAACTGTTACTTGATATATGGAGTTTGGGCTTCTGTTGTCTAATATTCGTTTTCCTTGGGTGTGAACTATGGATTATGAAACAGAAGTCGGCATGTAATATGCACTCGAGATTGCTTTCATTGGCTTTAATCATTTGTTTTATCAAACTAGTGGATTAAGGAAGTGGGAACCATGATCTCGTCTGTAGTCAATGCATGAGGAAATNTCTGGCTGCAAAATGCGGGAGGCTGCAGGTTTTGCCTACCGCTGCTTTGTTGTTTGGATTAAACCTTTACAGTGGAATCTTCAAATAAGGTAGATTCCCCC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00123	249549	253376	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0000166 nucleotide binding

GO:0003676 nucleic acid binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000123s00008445.1	PF00076.17	RRM_1	90	158	4.10E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	115.277
SRR1783600	control	115.475
SRR1783602	moderate drought stress	185.344
SRR1811619	moderate drought stress	195.214

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	126.946
DRR006520	Root Summer glycyrrhizin high producing strain	124.886
DRR006521	Root Winter glycyrrhizin high producing strain	74.841
DRR006522	Root Winter glycyrrhizin high producing strain	72.643
DRR006523	Root Summer glycyrrhizin low producing strain	132.517
DRR006524	Root Summer glycyrrhizin low producing strain	129.659
DRR006525	Leaf Summer glycyrrhizin high producing strain	25.566
DRR006526	Leaf Summer glycyrrhizin high producing strain	25.924

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	74.669
SRR2868004	Drought Stress (root)	71.230
SRR2967015	Control (root)	91.975

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	52.658
SRR9715740	Leaf	60.174
SRR9715741	Leaf	65.184
SRR9715739	Root	233.410
SRR9715742	Root	147.844
SRR9715743	Root	155.528

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	103.030
SRR8749028	MeJA induced 9h	52.233
SRR8749029	MeJA induced 9h	82.698
SRR8749030	Uninduced	44.841
SRR8749031	Uninduced	33.276
SRR8749032	Uninduced	77.890

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	118.718
SRR8400027	Control - Root	109.798