Gene detail information of Glyur000123s00008436 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G28790.1 | 4.00E-93 | Pathogenesis-related thaumatin superfamily protein |
| NR | XP_003539684.1 | 8.07E-144 | PREDICTED: osmotin-like protein-like [Glycine max] |
| Swissprot | tr|Q41350|OLP1_SOLLC | 6.00E-121 | Osmotin-like protein (Precursor) |
| trEMBL | tr|I1LQR8|I1LQR8_SOYBN | 3.00E-144 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G06950.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00123 | 206533 | 207291 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000123s00008436.1 | PF00314.12 | Thaumatin | 34 | 252 | 2.00E-74 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 71.309 |
| SRR1783600 | control | 76.149 |
| SRR1783602 | moderate drought stress | 27.057 |
| SRR1811619 | moderate drought stress | 28.168 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 113.477 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 118.107 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 27.125 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 26.440 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 61.698 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 64.156 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.249 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.704 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 56.970 |
| SRR2868004 | Drought Stress (root) | 26.216 |
| SRR2967015 | Control (root) | 45.440 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 11.989 |
| SRR9715740 | Leaf | 0.187 |
| SRR9715741 | Leaf | 3.217 |
| SRR9715739 | Root | 150.209 |
| SRR9715742 | Root | 38.065 |
| SRR9715743 | Root | 62.614 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.354 |
| SRR8749028 | MeJA induced 9h | 0.239 |
| SRR8749029 | MeJA induced 9h | 0.626 |
| SRR8749030 | Uninduced | 0.061 |
| SRR8749031 | Uninduced | 0.017 |
| SRR8749032 | Uninduced | 2.856 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 77.410 |
| SRR8400027 | Control - Root | 84.739 |