Gene detail

Gene detail information of Glyur000123s00008434

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G28800.1	4.00E-166	63 kDa inner membrane family protein
NR	KEH30130.1	0	60 kDa inner membrane protein [Medicago truncatula]
COG	YP_005440364.1	2.00E-46	hypothetical protein CLDAP_04270 [Caldilinea aerophila DSM 14535 = NBRC 104270]
Swissprot	tr\|Q9FY06\|PPF1_PEA	0	Inner membrane protein PPF-1, chloroplastic (Precursor)
trEMBL	tr\|A0A072UW90\|A0A072UW90_MEDTR	0	60 kDa inner membrane protein {ECO:0000313\|EMBL:KEH30130.1}

Sequence

Transcript Sequence

>Glyur000123s00008434.1
CCGTAATCTTATGACGTGTCCTTCAGTCGCTGGCTGAAAATGAAAAGGAAAATCTGGGCGTGCCTTGTCCTTGCACCGCAAAAAAGAAAAGGGATAATTGAGAAATATCCCCTCTATCTCTAATCCGTAATGAGAAGCTGAAGCCTGAAGCGAGCCTCGTGCACAATCTTCTTAAAGCTTCTCATCCATGGCGAAGACACTGATTTCGTCTCCATCATCATTCCTCGGCACGCCGCTTCCTTCACTTCATCGCCACCACTCCCTCCATCGCACCAGGCTAGTCACCAAGGTCCACTTCAGTCTCCACCAACTCCCCCCTATTCAATCCATAAGCCATTCCCTTGACCTCGCCGGAATCGCCGCCAGAGCCGAAAGCCTTCTTTACACGCTCGCCGATGCCACCGTTGCCGCCGATTCCGCCGATGCCGTTGCAAAGAAGAGCGGAGGTTGGTTCGGCTTCATCTCCGATGCCATGGAGTCTGTTCTCAAGGTGTTAAAGGATGGTCTGTCTGCCGTGCATGTGCCTTACTCATATGGATTTGCTATCATATTACTCACTGTTATAGTTAAGGCCGCCACACTTCCCTTGACAAAGCAACAGGTCGAATCAACACTAGCTATGCAAAATCTTCAACCTAAAATTAAGGCGATTCAACAAAGATATGCCGGCAATCAGGAAAGAATACAACTTGAGACTTCAAGGCTATATAAGCAGGCTGGAGTTAACCCATTGGCAGGTTGTTTACCAACTCTGGCTACAATTCCAGTCTGGATTGGTCTCTACCAGGCTTTATCAAATGTAGCAAATGAGGGACTGTTAACAGAAGGTTTCTTTTGGATCCCTTCTCTGGGTGGTCCTACTACCATTGCTGCTAGACAAAGTGGATCTGGAATTTCTTGGCTTATTCCTTTTGTGGATGGTCATCCACCTTTGGGTTGGCATGATACTGCAGCATATCTTGTTTTACCTATTCTTCTAATTGTCAGTCAGTACGTTTCNATGGAAATCATGAAACCACCTCAGACAGACGATCCTTCTCAAAAGAATACACTTCTTATTTTCAAGTTTCTGCCACTCATGATTGGTTACTTCTCACTATCTGTCCCATCAGGATTAACAATTTACTGGTTTACAAACAATGTGCTGAGCACAGCTCAACAAGTATGGTTGCGCAAATTAGGAGGTGCAAAACCTGTTGTTAATGAAAATGCTAGTGGAATTATTACCGCAGGGCGAGCTAAAAGATCAGCTTCTCAGCCAGCAAGGGCTGGTGAAAGGTTTAGGCAGTTAAAAGAAGATGAGAAGAAGAATATGCTAAGCAAGGCACTGCCAGTGGAGGAAGTTCAACCTCTGGCTTCTGCTTCAGCTTCTGATGACGGCTCAGACGTAGAAAGCAATAACAAGGAACAGGAAGTTGCAGAAGAAGCATATGCTTCTAAAGTTAGCGAAGAGGGTCAAAGTTATTCTAGGGAAAGAAGAAGCAAGCGTTCAAAGCGGAAGCGTGCTGTATAGAAAAGGACCCATACAATTGTAGTTTATAGCGAGTCTTGTATATCTCAACAGTTTGTACCATTTTTGGGTTGACAGTTTTATTGATTATGTTATTTAATCCTGCAAAATATCTATTGTTTCGATTTCAAGTGTTAGNAAAAGCAAATTGTCTTCTAACACGCCTACTTTCTTTCAGTCAAGAATTTCTTGTTGGAAACAAGACCGCATAAAAACTTGTAGTGAAAATTATCAATTGAAAGCAAAATTTGGAATCTTGAGACGGCTGAAGACATCGTCCTTACATATTATTAAGAAATGAGAAAGGAATGATGCATTTTCTTATTGATCTCGGCCATGATACTTATATACGAAGTTGGTGTATCGAACTTGAACAAATTATCTTTAATTACAAGTAAGTGTCATAACTATATTAGTTTACATGTTGATTGTAGGGGAGGTGTGTCAAAGGTTAGACTAAATGGCTTAAATACTGTTTTCATCCTTGCAAATATATCATTTTTAGTTTTTAGTTCCTGTGATTTTTTTTCATCTCTGTAACGTTCAAAACTTTGATTGGACTATAATGGTGAATGGAATTTGAATTTGCTGCTGAGAATTGTTCCTAATGTTAAAACCCAGTTGAAGGACTATAACGTTTCATTGTTACAAAACAATGTAAAACTGATAGTATAAATTTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00123	191513	199033	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0051205 protein insertion into membrane

cellular_component
GO:0016021 integral component of membrane

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000123s00008434.1	PF02096.15	60KD_IMP	115	330	6.70E-61

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	13.127
SRR1783600	control	13.299
SRR1783602	moderate drought stress	16.624
SRR1811619	moderate drought stress	16.656

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	14.685
DRR006520	Root Summer glycyrrhizin high producing strain	14.569
DRR006521	Root Winter glycyrrhizin high producing strain	23.201
DRR006522	Root Winter glycyrrhizin high producing strain	22.686
DRR006523	Root Summer glycyrrhizin low producing strain	15.136
DRR006524	Root Summer glycyrrhizin low producing strain	14.545
DRR006525	Leaf Summer glycyrrhizin high producing strain	179.509
DRR006526	Leaf Summer glycyrrhizin high producing strain	179.220

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	13.780
SRR2868004	Drought Stress (root)	12.762
SRR2967015	Control (root)	16.194

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	96.948
SRR9715740	Leaf	133.739
SRR9715741	Leaf	84.610
SRR9715739	Root	5.839
SRR9715742	Root	7.888
SRR9715743	Root	7.584

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	15.322
SRR8749028	MeJA induced 9h	15.106
SRR8749029	MeJA induced 9h	11.527
SRR8749030	Uninduced	10.950
SRR8749031	Uninduced	7.759
SRR8749032	Uninduced	10.109

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	16.080
SRR8400027	Control - Root	16.347