Gene detail

Gene detail information of Glyur000123s00008429.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G55370.2	7.00E-39	OBF-binding protein 3
NR	XP_004505871.1	3.64E-112	PREDICTED: dof zinc finger protein DOF3.6-like [Cicer arietinum]
Swissprot	tr\|Q9M2U1\|DOF36_ARATH	5.00E-51	Dof zinc finger protein DOF3.6
trEMBL	tr\|K7LTC4\|K7LTC4_SOYBN	4.00E-105	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA12G06880.2}

Sequence

Transcript Sequence

>Glyur000123s00008429.1
ATGGTTTTCTCTTCCATTCCAGGCTATGTAGATCCTCATCCTCCCAATTGGCATCACCAGCAACCAAATTATCATCATCACCATCATCATGCTCAAGCAAATAATGGAAGTGATGTCACTCAGTTGCTTCCACCTTTGCCACTTCAAGTGGGTGGAGGAAGTGGAAGTACAGTGGGTTCAATCAGGCCAGGTTCCATGGCAGATCGAGCTCGTTTGGCAAAGATACCACCACCGGAGGCAGCACTGAAGTGTCCACGCTGTGAATCGACCAACACCAAATTCTGCTACTTCAACAACTATAGCCTCTCACAGCCACGTCACTTCTGCAAGACATGTAGGCGTTACTGGACAAGAGGTGGTGCTCTTAGGAATGTCCCAGTCGGTGGAGGTTGCCGTAGGAACAACAAGAAGAACAAAAGAAGCCGCTCCAAATCTCCCTCAACTACTGAGAATAATAATAATAATAATAATAATAAGCAGATACTTAATAATGGCGCCACTGCCGCCACTAATTCTGAGCTGAATAATATTATTGGTCAGTTGCCACAACAACCACCTAGTAACCTACCCTTCATGGCATCTCTGCAGAATCTGAGCCGTTATAGTCTTGGTGGAACAGATCATCATCACATGGGGTTTCAAAGTGGAGGAGTGGAACAGTGGAGGTTGCAGCAATTTCCTTTCTTGGGTAGTTTTGAATCGAATTCTTCTGGTGGTGGGAATTCGTACCCTTTTCATCAAAGTGAGAGTATTGATGAAGAAGGGCCATCTGGGTTGGTTGGAGTTGGAGTTGGAGTTGGAGATATAGCATTAGGAGGAGCAGCACCGAGTTCTTCTAGGGTTACTACTCAGATGCCACCACCGGTTAAGATGGAAGAAAATGGAGCTGCTATGAATTTGTCAAGATCGAATCATCTCAGTNGTAGTACTGTCTCTCATCATGACCAACATCAACATAATAACCAATTCTATTCATGGACTACTCATGATATGTCAGGTCTTGCCTCTAATTCCTCCACTACTCATCATCTCTTATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00123	155546	156786	-

Gene family

Gene family	subfamily
Transcription Factors Family	C2C2-Dof

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function
GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000123s00008429.1	PF02701.10	zf-Dof	78	138	1.80E-35

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	21.345
SRR1783600	control	21.637
SRR1783602	moderate drought stress	22.538
SRR1811619	moderate drought stress	22.571

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	13.311
DRR006520	Root Summer glycyrrhizin high producing strain	13.366
DRR006521	Root Winter glycyrrhizin high producing strain	1.091
DRR006522	Root Winter glycyrrhizin high producing strain	1.201
DRR006523	Root Summer glycyrrhizin low producing strain	19.329
DRR006524	Root Summer glycyrrhizin low producing strain	19.724
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.012
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.478

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	17.235
SRR2868004	Drought Stress (root)	20.480
SRR2967015	Control (root)	25.182

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	10.695
SRR9715740	Leaf	8.356
SRR9715741	Leaf	12.685
SRR9715739	Root	8.108
SRR9715742	Root	35.842
SRR9715743	Root	28.957

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.226
SRR8749028	MeJA induced 9h	3.132
SRR8749029	MeJA induced 9h	1.804
SRR8749030	Uninduced	0.730
SRR8749031	Uninduced	0.133
SRR8749032	Uninduced	0.082

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.133
SRR8400027	Control - Root	9.969