Gene detail

Gene detail information of Glyur000123s00008421

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G07630.1	pol-like 5
NR	XP_004505865.1	PREDICTED: probable protein phosphatase 2C 4-like [Cicer arietinum]
Swissprot	tr\|Q9LQN6\|P2C04_ARATH	Probable protein phosphatase 2C 4
trEMBL	tr\|I1LQQ6\|I1LQQ6_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA12G06790.1}

Sequence

Transcript Sequence

>Glyur000123s00008421.1
AAAAAAGTCTTTATTCCAAAAGTCAACGCCTTCTCTCTCTGTTCTTCCTCTCTTATCAGCTTCAACTTGTCTTTCTTCACCATCTGGTTCTTTCCCTCTCTCTCTCTCTTTCTCTCTCGTTTGCTTGCTTCCTATCTATAGTTCAGAAGTTCCTCAACACCAAGCAAGCCAGCATGAATAACGAGTTGTAGCAACCGTATTATCTTGCCTGTATTCTTTTGATTCTTTTGTTTGTTTGTTTTTTCTTTTTTTTTATTTGGTTTGCGATGGGTAACGGATTAGGAAAGCTAACGGTGTGTTTCACGGGAAACGGCGGTGGTGGACGGAAGCATGACATATCCATTCTGATTACGGAGCCACTGGATGAGGGACTGGGTCATTCGTTCTGCTATGTTAGGCCCGACCCGACCCGAATATCGTCATCGAAGGTCCACTCGGAGGAAACCACGACCTTCAGAACGATCTCCGGCGCGTCCGTGAGCGCGAACACGTCGACGCCNCTGTCGACGGCGTTCATAGACTTGTACTCCTACGGCTGCATCGACAGAGCCGCGGCGTTCGAGAGTTCAACCTCCTTCGCTTCGCTTCCCCTGCAACCGGTCCCGAGGAACCTGATGGGTTCGGGTCCCTTTTCCGGCAGTATCGGAGCTGGGTTTCCGGGTTCGGGTNCTCTTGAGAGAGGGTTCATGTCGGGCCCGATCGAGCGCGGGTTCATGTCAGGTCCAATCGATCGCGGGTTATTCTCGGGTCCGATGGAAAAGGATGGCTCCGACCAGTTCCAGAGAAGCTTCTCCCACGGCGGTTTAGGGTTTCCGGTGAGACCCAGAACGCGGAAGGATCGGTGGATTCGTGTTCTTCAGAGGGCGATATCGAAGACTCTGTCTCGGGGGCAGAACTCGATCGTTGCTCCGATCAAAGGGGCGATGTGGAAGGAACCGCCGCCGCCGCCACCGGAGTGGATGGTTGCGGCGGAGAAGCACAACGAGAACTTGACGGTTAGCAGCTTGAATTTCAGCAGCGAGGGTAGTTTGGAAGACGATGATTCGATGGGGAGTCAGAATCTCCAGTGGGCTCAGGGGAAAGCAGGGGAGGACCGTGTTCACGTGGTGGTGTCGGAGGAACACGGTTGGGTCTTCGTGGGTATCTATGATGGTTTCAACGGTCCTGATGCACCCGATTACCTCCTGTCAAATCTCTACACGGCCGTGCACAAGGAACTCAAGGGGTTGCTCTGGGATGATGGGTGTACGCCAGAAAATCCCAATTCGGAATTTCAAGATTCGATGCCGATCGGTGATGCTGACGTTGTTGGGAAAGAGGATAGGTCGGTAGATGCTTGTTCTCAGTGTGTTGAGCAAGAAAATGATCATGCTTGTGCAAGTGGGGATGAAGTTTTGAAGAAAAAAAGAGGCAAGAATTCAAAGAACAAGTACAAAGGAGGTGCAGGGGCAGCGAAGAAGCATGAGGAGAATCAGAGGAGGTGGAAGTGTGAATGGGATAGGGAAAGACTAGAGCTTGATAGAAGATTGAAGGAGCAGCTAAGTGTGAGTCGATCTGGGTCTGATGCTAATTCCGTTAACCATTCGGATGTGTTGGAAGCTCTCTCTAGGGCTCTAAGGAAAACAGAGGAGTCTTATCTTGACATAGCGGATAAGATGGTCATGGAGAATCCCGAACTTGCCTTAATGGGTTCGTGTGTTCTTGTGATGTTGATGAAAGGGGAGGATGTTTACGTGATGAATGTTGGGGATAGTAGAGCCGTGCTGGCTCAGAAGGCTGATCCTGATTACTGGCTTGGGAAAATCAGACAGGACTTGGAGAGGATCAATGAGGAGACAATGAATGATCTTGAATCATGGGATGCTGCTGACACAACAAACGTGGTTCCAAGTCTAAGTGCGCTTCAGCTTACTAAGGATCATAGTACAAATGTTGAAGAAGAAGTTCTGAGAATAATAAAGGAGCACCCGGATGATCCTTGTGCTGTGGAAAATGATCGCGTGAAGAGATCTCTCAAGGTTACCCGAGCATTTGGTGCCGGATTTCTCAAACAGCCAAAGTGGAACAATGCACTTCTGGAGATGTTCAGAATAGACTACGTAGGAAACTCTCCTTACATCACCTGCCTCCCATATCTTAAACACCACAGATTAGGCCCAAAGGACAAATTTTTGATTCTATGCTCTGATGGGCTCTATCAATACTTGTCAAACGAAGAAGCAGTAGCNGAAGTTGAGCTTTTCATCACATTGCAACCTGAGGGAGACCCGGCTCAGCATTTGGTTGAAGAAGTGTTGTTTCGTGCTGCAAAGAAAGCTGGTATGGACTTTCACGAATTGCTTGAAATTCCACAAGGGGATAGGCGTCGATTCCACGATGATGTTTCCATCATTGTTATTTCTTTGGAGGGAAGGATATGGAGATCATGTGTATAAGTATAGTGAAAACCATATATTATATCATATATATTAAAAAAGAAGAAGAGGATATGAGAGATATGCTGCCGAAGGGTTACGCATCCTTTTTGCTCTTACCCCCTATCTACTCACCTTTGGTAAAAATAGCAACTAAGCTCTGGAAGAGTGCCTGGTAGATTAGTTGTGCAATTCAGTGAAGTGGGTGGTGAGGATTGTAAAGTTGTAAAAGCTGGATTTTGTTTATTATAACTCTCACATAAAAATTGTAATTTTTGTAATAAAAAGTCATTCCTTAAAAAAATCTTTTGGTCGTGCACAAAGCACTAGCAGCACCCTCCATCACTTTCTGCGACTCTGGTTGGCAAATGGCAGAGAATAGTCATATGTGCATCAGCATCTTTTTAATTTTCAAAATTAAAATACAGAGTGACATATTCCAAATCAAATTGCCAATGCAGGTTATGTTTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00123	102136	105803	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0003824 catalytic activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000123s00008421.1	PF00481.16	PP2C	435	668	5.70E-30

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.997
SRR1783600	control	7.997
SRR1783602	moderate drought stress	11.459
SRR1811619	moderate drought stress	11.489

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	18.166
DRR006520	Root Summer glycyrrhizin high producing strain	17.926
DRR006521	Root Winter glycyrrhizin high producing strain	5.447
DRR006522	Root Winter glycyrrhizin high producing strain	5.523
DRR006523	Root Summer glycyrrhizin low producing strain	26.818
DRR006524	Root Summer glycyrrhizin low producing strain	26.806
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.364
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.469

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	48.736
SRR2868004	Drought Stress (root)	71.956
SRR2967015	Control (root)	78.973

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	20.883
SRR9715740	Leaf	23.694
SRR9715741	Leaf	31.734
SRR9715739	Root	6.324
SRR9715742	Root	31.909
SRR9715743	Root	26.635

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	100.501
SRR8749028	MeJA induced 9h	167.801
SRR8749029	MeJA induced 9h	161.171
SRR8749030	Uninduced	79.255
SRR8749031	Uninduced	196.744
SRR8749032	Uninduced	120.508

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	43.526
SRR8400027	Control - Root	31.933