Gene detail information of Glyur000123s00008419 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G46560.1 | 9.00E-38 | Tim10/DDP family zinc finger protein |
| NR | NP_001236814.1 | 2.77E-59 | uncharacterized protein LOC100500613 [Glycine max] |
| Swissprot | tr|Q9XGX7|TIM9_ORYSJ | 1.00E-51 | Mitochondrial import inner membrane translocase subunit Tim9 |
| trEMBL | tr|C6T294|C6T294_SOYBN | 1.00E-59 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G06770.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00123 | 92698 | 94311 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000123s00008419.1 | PF02953.10 | zf-Tim10_DDP | 23 | 84 | 3.40E-19 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.840 |
| SRR1783600 | control | 7.705 |
| SRR1783602 | moderate drought stress | 5.321 |
| SRR1811619 | moderate drought stress | 5.250 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 18.868 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 18.801 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 9.333 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 9.102 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 12.708 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 12.759 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 12.014 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 11.979 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 66.082 |
| SRR2868004 | Drought Stress (root) | 41.122 |
| SRR2967015 | Control (root) | 36.904 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 26.360 |
| SRR9715740 | Leaf | 31.075 |
| SRR9715741 | Leaf | 20.201 |
| SRR9715739 | Root | 16.731 |
| SRR9715742 | Root | 17.046 |
| SRR9715743 | Root | 16.868 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 38.911 |
| SRR8749028 | MeJA induced 9h | 10.389 |
| SRR8749029 | MeJA induced 9h | 29.086 |
| SRR8749030 | Uninduced | 5.932 |
| SRR8749031 | Uninduced | 4.473 |
| SRR8749032 | Uninduced | 6.007 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 42.144 |
| SRR8400027 | Control - Root | 40.124 |