Gene detail information of Glyur000123s00008416 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G39700.1 | 7.00E-127 | expansin A4 |
| NR | XP_003537990.1 | 1.11E-178 | PREDICTED: expansin-A4-like [Glycine max] |
| Swissprot | tr|O48818|EXPA4_ARATH | 2.00E-160 | Expansin-A4 (Precursor) |
| trEMBL | tr|I1LK20|I1LK20_SOYBN | 4.00E-179 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G14800.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00123 | 75825 | 79289 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000123s00008416.1 | PF03330.13 | DPBB_1 | 68 | 154 | 1.80E-24 |
| Glyur000123s00008416.1 | PF01357.16 | Pollen_allerg_1 | 166 | 243 | 1.50E-24 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 310.983 |
| SRR1783600 | control | 314.375 |
| SRR1783602 | moderate drought stress | 75.372 |
| SRR1811619 | moderate drought stress | 74.421 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 202.429 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 200.216 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 114.718 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 115.202 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 85.176 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 84.707 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 184.283 |
| SRR2868004 | Drought Stress (root) | 94.498 |
| SRR2967015 | Control (root) | 112.952 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 52.392 |
| SRR9715740 | Leaf | 4.173 |
| SRR9715741 | Leaf | 8.734 |
| SRR9715739 | Root | 192.131 |
| SRR9715742 | Root | 78.897 |
| SRR9715743 | Root | 97.403 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 140.146 |
| SRR8749028 | MeJA induced 9h | 27.366 |
| SRR8749029 | MeJA induced 9h | 25.426 |
| SRR8749030 | Uninduced | 6.121 |
| SRR8749031 | Uninduced | 0.427 |
| SRR8749032 | Uninduced | 1.044 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 394.821 |
| SRR8400027 | Control - Root | 570.796 |