Gene detail

Gene detail information of Glyur000123s00008413

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G29050.1	5.00E-113	RHOMBOID-like 1
NR	XP_003542031.1	0	PREDICTED: inactive rhomboid protein 1-like [Glycine max]
COG	YP_004266084.1	1.00E-20	rhomboid family protein [Syntrophobotulus glycolicus DSM 8271]
Swissprot	tr\|Q8LB17\|Y3846_ARATH	2.00E-07	Uncharacterized protein At3g58460
trEMBL	tr\|K7M3E7\|K7M3E7_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA13G41170.2}

Sequence

Transcript Sequence

>Glyur000123s00008413.1
ATGAATGGGAGGGACCCATCAACACCATCTTCGGCGGGTGCTGAAGTAAAATCTCATACGCGGCGTGGGGACCACCACACTGTCCATCCGGGGCCGGCGCGTGCACCCACTGTCCCGCCCGAGAGGCCTTTTCCGGCGAACCGCGACTCCATGCCGTTCAAGCGGTGGTTCCCGTGGCTGGTTCCGACATTCGTGGTGGCCAACGTGGCCTTGTTCGTTATCACCATGTATGAAAACGATTGTCCTAAGCGTTCCATTCCCGCTTCTTGCTTTGCTCCTTTTCTGGGCAGATTCTCGTTTCAGCCCCTCAAGGAAAACCCTCTCTTCGGTCCTTCTTCTTCCACGTTAGACAAGATGGGTGCCCTGCAAGTGGACAAAGTGATACATAGACACCAGGCTTGGCGCCTGTTCTCTTGTATATGGTTGCATGGCGGGGTTATCCATTTGCTTGCCAACATGTTGAGTCTTGTTTTCATTGGAATTCGTCTTGAGCAAGAGTTTGGATTTGTTCGAATTGGATTTCTGTATGTGATATCTGGTTTTGGAGGGAGTTTACTGTCTGCTCTATTCATACAATCAGGTATCTCTGTTGGTGCCTCTGGGGCACTATTTGGCTTACTAGGAAGCATGCTATCAGAGCTCTTAACAAATTGGACAATATATGCTAATAAGTTNGCTGCAATATTGACTCTTATTGTCATCATTATAATCAATTTAGCTGTTGGAATCCTTCCACATGTGGACAATTTTGCTCATATCGGAGGATTTATATCAGGTTTTCTTCTTGGATTTGTCTTTCTGATTCGCCCTCAGTATAAATGGGTTAGCCAAAGAAATTCTCATTCTCGATATGCTGCCCCTCCTGTGAACTCTAAGCACAAGCCTTATCAGTATGTACTTTGGGTCGTCTCTTTCATGCTACTTAGTGCTGGATTGATAGTTGGGGTGGTTTTGCTCCTTAAAGGGGTGAACTTGAATGATCACTGCTCTTGGTGTCACTATTTAAGTTGTGTCCCAACCTCAAAATGGAGCTGCAAGCCGCAGGAAGTTTATTGTGAGTCATCCCAAATCGGAAACCAACTTAACATGACGTGCCTGGGCAATGGCAGAAGTGGCATTTTTCCTGTGACAAATAGTAGCCCTTCCCAGGCTCAACAGCTATGTTCTCACCTTTGCAGTTGATACACACATAAATACAACAATTCTTAATGCAATACCATTCAACCAACTTGTATATATGATTCATTCTCGCTACTGCAGATTAATGTCTTCCTTGTGCATTTGGAATGATGGTTGTTACCGTAGTTATTGTGTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00123	62678	66236	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006508 proteolysis

cellular_component
GO:0016021 integral component of membrane

molecular_function
GO:0004252 serine-type endopeptidase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000123s00008413.1	PF01694.17	Rhomboid	128	271	4.20E-50

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.516
SRR1783600	control	3.383
SRR1783602	moderate drought stress	1.636
SRR1811619	moderate drought stress	1.642

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.778
DRR006520	Root Summer glycyrrhizin high producing strain	3.492
DRR006521	Root Winter glycyrrhizin high producing strain	0.644
DRR006522	Root Winter glycyrrhizin high producing strain	0.807
DRR006523	Root Summer glycyrrhizin low producing strain	2.397
DRR006524	Root Summer glycyrrhizin low producing strain	2.450
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.517
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.478

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.217
SRR2868004	Drought Stress (root)	6.382
SRR2967015	Control (root)	7.522

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.517
SRR9715740	Leaf	3.379
SRR9715741	Leaf	2.371
SRR9715739	Root	4.663
SRR9715742	Root	2.371
SRR9715743	Root	2.944

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.317
SRR8749028	MeJA induced 9h	2.680
SRR8749029	MeJA induced 9h	3.661
SRR8749030	Uninduced	0.184
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.768

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.493
SRR8400027	Control - Root	12.035