Gene detail information of Glyur000123s00008403 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G29070.2 | 2.00E-99 | Ubiquitin fusion degradation UFD1 family protein |
| NR | XP_003547271.1 | 3.87E-156 | PREDICTED: ubiquitin fusion degradation protein 1 homolog isoform X1 [Glycine max] |
| trEMBL | tr|I1MDD7|I1MDD7_SOYBN | 1.00E-156 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA15G04140.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00123 | 14043 | 16873 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000123s00008403.1 | PF03152.9 | UFD1 | 74 | 256 | 3.10E-79 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.761 |
| SRR1783600 | control | 8.982 |
| SRR1783602 | moderate drought stress | 8.010 |
| SRR1811619 | moderate drought stress | 8.047 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 9.328 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 9.134 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.127 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.903 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.298 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.237 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.546 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.393 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 8.642 |
| SRR2868004 | Drought Stress (root) | 11.138 |
| SRR2967015 | Control (root) | 10.018 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.974 |
| SRR9715740 | Leaf | 4.341 |
| SRR9715741 | Leaf | 3.727 |
| SRR9715739 | Root | 0.991 |
| SRR9715742 | Root | 2.331 |
| SRR9715743 | Root | 2.823 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 24.714 |
| SRR8749028 | MeJA induced 9h | 19.780 |
| SRR8749029 | MeJA induced 9h | 17.346 |
| SRR8749030 | Uninduced | 10.866 |
| SRR8749031 | Uninduced | 9.603 |
| SRR8749032 | Uninduced | 6.123 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 7.004 |
| SRR8400027 | Control - Root | 6.398 |