Gene detail information of Glyur000123s00008402 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G59480.1 | 9.00E-102 | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein |
| NR | XP_004507175.1 | 2.49E-174 | PREDICTED: uncharacterized protein C24B11.05-like [Cicer arietinum] |
| COG | YP_004173930.1 | 2.00E-31 | pyrimidine 5-nucleotidase family protein [Anaerolinea thermophila UNI-1] |
| trEMBL | tr|G7JUV7|G7JUV7_MEDTR | 8.00E-170 | Haloacid dehalogenase-like hydrolase {ECO:0000313|EMBL:AES88887.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00123 | 10672 | 13209 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000123s00008402.1 | PF13419.1 | HAD_2 | 18 | 152 | 2.40E-10 |
| Glyur000123s00008402.1 | PF13419.1 | HAD_2 | 197 | 241 | 4.60E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.613 |
| SRR1783600 | control | 0.628 |
| SRR1783602 | moderate drought stress | 0.845 |
| SRR1811619 | moderate drought stress | 0.800 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.731 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.821 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.741 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.738 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.699 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.719 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 25.870 |
| SRR2868004 | Drought Stress (root) | 14.766 |
| SRR2967015 | Control (root) | 17.193 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 8.635 |
| SRR9715740 | Leaf | 1.939 |
| SRR9715741 | Leaf | 6.859 |
| SRR9715739 | Root | 0.505 |
| SRR9715742 | Root | 0.394 |
| SRR9715743 | Root | 1.379 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 47.225 |
| SRR8749028 | MeJA induced 9h | 25.421 |
| SRR8749029 | MeJA induced 9h | 44.757 |
| SRR8749030 | Uninduced | 10.782 |
| SRR8749031 | Uninduced | 11.352 |
| SRR8749032 | Uninduced | 20.824 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.964 |
| SRR8400027 | Control - Root | 2.612 |