Gene detail

Gene detail information of Glyur000123s00008400

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT2G29080.1	FTSH protease 3
NR	KHN32140.1	ATP-dependent zinc metalloprotease FTSH 10, mitochondrial [Glycine soja]
COG	YP_004316297.1	ATP-dependent metalloprotease FtsH [Sphingobacterium sp. 21]
Swissprot	tr\|Q8VZI8\|FTSHA_ARATH	ATP-dependent zinc metalloprotease FTSH 10, mitochondrial (Precursor)
trEMBL	tr\|I1LQN8\|I1LQN8_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA12G06530.1}

Sequence

Transcript Sequence

>Glyur000123s00008400.1
GTAATAAGCAAGGTGGAAAGGCGTACTGTTGCTTACCATGAATCAGGCCATGCTGTTGCAGGCTGGTTCTTGGAACATGCTGAGCCCTTGTTCAAAGTAACTATTGTTCCTCGTGGAACAGCAACTCTTGGGTTTGCCCAGTATGTTCCAAATGACAACCTTCTCATGACAAAGGAGCAGTTTTTTGATATGACTTGCATGATCCTTGGTGGTCGGGTTGCTGAGCAGGTTATCCTTACCTCTTTTCTGTCTAGTGTTCTCATTGGGAGAATCTCAACAGGAGCACAAAATGACTTGGAAAAAGTGACCAAGATGATGTATGACCAAGTAGCAGTCTATGGTTTCAGCGACAAAGTGGGGCCCCTCTCTTTTCCGGACTCGTTTGAGGACTCAAAACCATACAGCAGCACAACTGGTGCAATGATTGATAATGAAGTGCGAGAATGGGCGAAAAAAGCATATGAACGCACAGTACAGCTTATAGAGGAACACAAGGAGAAAGTAGCTCAAATTGCAGAGTTACTACTTGAAAAAGAGGTACTTCACCATGATGACTTGGTTAAAGTATTGGGTAAGCGACCCTTCAAGAGTAGTGAACCTACCAATTATGATAAATTTATGCAAGGCTTTCAAGAGGATGAGGAAAAAGTCACAGAAAGCACTGTCAATGGGCCAGAGGAGGGTGGAGGGTCTACTACACCTTTAGAGCCTCAGGATTTTTTGCGAAGTGATGGGAGATTGGGAACCCTTTCGGGAGCGCCACGAACGAATACGAATGTCTATTCCGACGGAGCCGAAGGGCAATTAGGGCTTCTCAGGGGATACGTATCTTCTGCAAGAGCTCCCAGTAATGGCTTCATTTCCAATTTGCCTGATTTTAAATCTGTTGCCGCAAACCCTAGGCTTTGCCGCCTGTTTTCCAGCGAATCCCCGAAGAAGAAGAATTATGAGAACTTTCAACCCAAGAAAAAGAAGGAAATACCAAAGGGAAAAGAAGGAAATTCTAAAGATGAGTCAAACACAAACTCAGATGATTCTGGAAATTTTAACGATGCTTTCATGAAACAATTACCAAATATGATCACTTTATCATTGATGATGACGCTGTTTGTTACGTCCTTTCCTTTTGGTCCTCGTGAGCAGCAGCAGATTAGCTTTCAGGAGTTTAAAAATAAGCTTTTGGAACCAGGATTAGTCGACCATATTGTTGTCTCAAACAAATCAGTTGCCAAAATATATGTAAGGAGCTCTCCACATAATCAAACAGACAGTGAAATGGTCCAAGGAACCCTCCCTGCAAAGGGATCTGGAGGCCAATATAAATATTTTTTCAATATTGGAAGTGTCGAGTCTTTTGAGGAGAAGTTAGAGGAAGCGCAAGAAGCACTAGGCATTGACCCTCACGATTATGTACCTGTTACGTATTCTTCCGAAATGGTTTGGTACCAGGAATTGATGAGATTTGCTCCAACACTGTTGCTTTTGGGATCTCTCCTGTATATGGGAAGGAGAATGCAGGGTGGACTTGGTGTTGGTGGTGGTGCTGGTGGTAAGGCTGGTCGTGGAATATTCAACATAGGAAAAGCCCATGTTACTAAAGTAGACAAAAATGCCAAAAACAAGGTTTATTTCAAAGATGTTGCTGGCTGTGATGAGGCAAAGCAAGAAATTATGGAGTTTGTCCACTTCCTCAAGAACCCAAAGAAATATGAAGAACTTGGTGCAAAAATTCCAAAAGGTGCTCTTCTGGTTGGTCCTCCAGGCACAGGAAAAACCCTTTTAGCAAAAGCAACTGCAGGAGAGTCTGGTGTGCCATTTCTTTCTATAGCTGGCTCTGATTTCATGGAAATGTTTGTCGGTGTTGGACCATCTAGGGTGAGAAACTTGTTTCAGGAAGCAAGGCAGTGTGCTCCCAGTATAGTATTTATTGATGAGATTGATGCAATTGGTCGGGCAAGGGGACGTGGAGGTTTCTCTGGTGCAAATGATGAGCGTGAAAGTACTTTAAATCAGTTGTTGGTGGAGATGGATGGTTTTGGAACCACTGCTGGGGTTGTTGTGCTGGCAGGAACAAATAGACCAGATATATTAGACAAAGCCCTACTTAGGCCTGGACGTTTTGACCGCCAGATATCAATTGATAGACCTGACATTAAAGGTCGTGACCAGATATTTCAGATCTACTTGAAAAAGATCAAACTTGACCATGAGCCTTCATATTTTTCTCAAAGGCTTGCAGCCCTTACTCCAGGATTTGCTGGAGCAGACATTGCTAATGTCTGCAATGAAGCTGCTCTGATTGCTGCAAGAGGTGAGAAAACACAAGTAATAAGCAAGTTGGAAAGGCGTACTGTTGCTTACCATGAATCAGGCCATGCTGTTGCAGGCTGGTTCTTGGAACATGCTGAGCCCTTGTTGAAAGTATCTATTGTTCCTCGTGGAACAGCAGCTCTTGGGTTTGCCCAGTATGTTCCAAATGACAACGTTCTCATGACAAAGGAGCAGCTTTTTGATATGACTTGTATGACCCTTGGTGGTCGGGCTGCTGAGCAGGTTCTCATTGGGAGAATCTCAACTGGAGCACAAAATGATTTGGAAAAAGTGACCAAGATGACGTATGCCCAAGTAGCAGTCTATGGTTTCAGCGACAAAGTGGGTCTCCTCTCTTTCCCTCCAAGAGAGGACTCGTTTGAGATGACCAAACCATACAGCAGCAAAACTGCTGCAATCATTGATAATGAAGTGCGAGAATGGGTGAACAAAGCATATGAACGCACGATACAGCTTGTAGAGGAACACAAGGAGAAAGTAGCTCAAATTGCAGAGTTACTGCTTGAAAAAGAGGTACTTCACCAGGAGGACTTGGTTAAAGTTTTGGGTGAGCGACCCTTTAAGAGTAGTGAACCTACCAATTATGATAGATTTATGCAAGGTTTTCAAGAGGATGAGGAAAAAGTCATAGAAAGCACTGTCAATGGGCCTGAGGAGGGTGAGGGTCCACACCTTTAGATCCTCAGGTTGTTCCCACATAGTTGAATAAGTTTTGGTTTGTTTATTGTACATGAATATCTTGTTTTTTCAATTTGCTGATATGGACAAAACTTGTATGGTAACTGCAAAATAAGAGCAATTCGTTTCTGATTTAACTTAAATGGATATGTTATAGAGGAGTCAATCCAATTCCAATTCAGTTCAAGTCTAGTTC

Protein Sequence

>Glyur000123s00008400.1
VISKVERRTVAYHESGHAVAGWFLEHAEPLFKVTIVPRGTATLGFAQYVPNDNLLMTKEQFFDMTCMILGGRVAEQVILTSFLSSVLIGRISTGAQNDLEKVTKMMYDQVAVYGFSDKVGPLSFPDSFEDSKPYSSTTGAMIDNEVREWAKKAYERTVQLIEEHKEKVAQIAELLLEKEVLHHDDLVKVLGKRPFKSSEPTNYDKFMQGFQEDEEKVTESTVNGPEEGGGSTTPLEPQDFLRSDGRLGTLSGAPRTNTNVYSDGAEGQLGLLRGYVSSARAPSNGFISNLPDFKSVAANPRLCRLFSSESPKKKNYENFQPKKKKEIPKGKEGNSKDESNTNSDDSGNFNDAFMKQLPNMITLSLMMTLFVTSFPFGPREQQQISFQEFKNKLLEPGLVDHIVVSNKSVAKIYVRSSPHNQTDSEMVQGTLPAKGSGGQYKYFFNIGSVESFEEKLEEAQEALGIDPHDYVPVTYSSEMVWYQELMRFAPTLLLLGSLLYMGRRMQGGLGVGGGAGGKAGRGIFNIGKAHVTKVDKNAKNKVYFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSIAGSDFMEMFVGVGPSRVRNLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQISIDRPDIKGRDQIFQIYLKKIKLDHEPSYFSQRLAALTPGFAGADIANVCNEAALIAARGEKTQVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVSIVPRGTAALGFAQYVPNDNVLMTKEQLFDMTCMTLGGRAAEQVLIGRISTGAQNDLEKVTKMTYAQVAVYGFSDKVGLLSFPPREDSFEMTKPYSSKTAAIIDNEVREWVNKAYERTIQLVEEHKEKVAQIAELLLEKEVLHQEDLVKVLGERPFKSSEPTNYDRFMQGFQEDEEKVIESTVNGPEEGEGPHL

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00123	181	8092	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006508 proteolysis

cellular_component

GO:0016020 membrane

GO:0016021 integral component of membrane

molecular_function

GO:0004222 metalloendopeptidase activity

GO:0005524 ATP binding

GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000123s00008400.1	PF01434.13	Peptidase_M41	1	188	4.70E-57
Glyur000123s00008400.1	PF06480.10	FtsH_ext	365	468	8.30E-10
Glyur000123s00008400.1	PF00004.24	AAA	582	714	9.90E-41
Glyur000123s00008400.1	PF01434.13	Peptidase_M41	771	957	2.50E-65

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	16.388
SRR1783600	control	16.361
SRR1783602	moderate drought stress	12.409
SRR1811619	moderate drought stress	12.391

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	26.334
DRR006520	Root Summer glycyrrhizin high producing strain	26.321
DRR006521	Root Winter glycyrrhizin high producing strain	32.427
DRR006522	Root Winter glycyrrhizin high producing strain	31.727
DRR006523	Root Summer glycyrrhizin low producing strain	24.412
DRR006524	Root Summer glycyrrhizin low producing strain	24.127
DRR006525	Leaf Summer glycyrrhizin high producing strain	25.918
DRR006526	Leaf Summer glycyrrhizin high producing strain	25.979

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	41.600
SRR2868004	Drought Stress (root)	40.259
SRR2967015	Control (root)	37.868

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	39.284
SRR9715740	Leaf	40.425
SRR9715741	Leaf	40.786
SRR9715739	Root	7.787
SRR9715742	Root	36.322
SRR9715743	Root	36.331

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	70.977
SRR8749028	MeJA induced 9h	127.051
SRR8749029	MeJA induced 9h	115.284
SRR8749030	Uninduced	76.776
SRR8749031	Uninduced	75.787
SRR8749032	Uninduced	75.397

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	33.010
SRR8400027	Control - Root	37.614