Gene detail information of Glyur000122s00010230 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| NR | XP_004485703.1 | 0 | PREDICTED: heterogeneous nuclear ribonucleoprotein U-like protein 1-like isoform X2 [Cicer arietinum] |
| trEMBL | tr|I1MEA2|I1MEA2_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA15G07310.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00122 | 308572 | 311647 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000122s00010230.1 | PF00622.23 | SPRY | 81 | 186 | 1.70E-10 |
| Glyur000122s00010230.1 | PF13671.1 | AAA_33 | 262 | 407 | 3.90E-20 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.618 |
| SRR1783600 | control | 2.675 |
| SRR1783602 | moderate drought stress | 3.090 |
| SRR1811619 | moderate drought stress | 3.038 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.507 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.545 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.045 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.036 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.886 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.873 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.676 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.739 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.755 |
| SRR2868004 | Drought Stress (root) | 7.534 |
| SRR2967015 | Control (root) | 5.801 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.432 |
| SRR9715740 | Leaf | 1.901 |
| SRR9715741 | Leaf | 1.763 |
| SRR9715739 | Root | 1.160 |
| SRR9715742 | Root | 1.719 |
| SRR9715743 | Root | 2.119 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 10.202 |
| SRR8749028 | MeJA induced 9h | 16.105 |
| SRR8749029 | MeJA induced 9h | 7.655 |
| SRR8749030 | Uninduced | 5.588 |
| SRR8749031 | Uninduced | 6.051 |
| SRR8749032 | Uninduced | 4.392 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.813 |
| SRR8400027 | Control - Root | 3.941 |