Gene detail information of Glyur000122s00010224 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G61350.1 | 6.00E-179 | ARM repeat superfamily protein |
| NR | XP_003543090.1 | 0 | PREDICTED: vacuolar protein 8-like [Glycine max] |
| Swissprot | tr|Q9FL17|PUB40_ARATH | 2.00E-06 | U-box domain-containing protein 40 |
| trEMBL | tr|I1M2D0|I1M2D0_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G32040.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00122 | 286986 | 288683 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.699 |
| SRR1783600 | control | 7.699 |
| SRR1783602 | moderate drought stress | 4.671 |
| SRR1811619 | moderate drought stress | 4.739 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.190 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.037 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.867 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.532 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.832 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.615 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.505 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.436 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 15.611 |
| SRR2868004 | Drought Stress (root) | 16.377 |
| SRR2967015 | Control (root) | 19.258 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 5.179 |
| SRR9715740 | Leaf | 3.839 |
| SRR9715741 | Leaf | 2.824 |
| SRR9715739 | Root | 7.191 |
| SRR9715742 | Root | 7.366 |
| SRR9715743 | Root | 8.444 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 10.248 |
| SRR8749028 | MeJA induced 9h | 10.819 |
| SRR8749029 | MeJA induced 9h | 5.583 |
| SRR8749030 | Uninduced | 3.493 |
| SRR8749031 | Uninduced | 1.799 |
| SRR8749032 | Uninduced | 2.089 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 20.067 |
| SRR8400027 | Control - Root | 25.844 |