Gene detail

Gene detail information of Glyur000122s00010215

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G05120.1	9.00E-133	Major facilitator superfamily protein
NR	KEH36498.1	0	equilibrative nucleoside transporter 6 [Medicago truncatula]
Swissprot	tr\|Q9M0Y3\|ENT3_ARATH	2.00E-179	Equilibrative nucleotide transporter 3
trEMBL	tr\|A0A072V578\|A0A072V578_MEDTR	0	Equilibrative nucleoside transporter 6 {ECO:0000313\|EMBL:KEH36498.1}

Sequence

Transcript Sequence

>Glyur000122s00010215.1
AATTAATCGGCCAAATCATTCAGTTTTGTAGCCAAACACTATCACTAATCGTCGTCGTCATGGTTATGATAGTAAACTAGGTTGTTATTGACAATGATGAATGACAAGGAAGATGATGGTGATTACGATTATGACTAGTGCAGAAACCAGACCCCTTCCCAACCATGCTACGATTACCACTTACGAGGTTACCCACCCGGTGAAGGGGTGCAGCATTAGCAATAATATTATTAATATATTATTATATATCATCGCCGACTTCATCAAAAACCATTTTCATATAATTTATAGATAAGGTCCAAACTGTACCTGCGCGCCTTCATTCAATCTCTCTCTCTCTCTCTGATCCATCTTCCAACCATGGCAACAAATAGTAGTAGGAGTGGAATGGCCATGAACAAGATTACTAGGAATGACAGTGGAGCACCAAGAAAGCCCGAGGGAAAATACAAAGCAATGGCAGTTTGTTTCATTCTCGGACTTGGGTCCCTTGTATCCTGGAACAGCATGTTGACCATAGGAGATTACTATTACAAATTGTTCCCCAAATATCATCCTGCAAGGGTACTTACACTGGTTTATCAACCATTTGCACTTGGAACAATGGTAATACTGGCATACTATGAGTCAAAGATCAATACTAGGATGCGGAATTTGGCCGGATACACGCTTTTCTTTGCTAGTACTTTCTTGGTTCTTGTTTTGGATCTAGGAACATCAGGGAAAGGTGGAATTGGACCTTATATTGGTTTATGTTTGCTAGCTGCTTGTTTTGGAATTGCAGATGCTCATGTGGAAGGTGGCATGTCTTACCTTGCTGGTTTGGCAGCATCAGGGGCTCTAATTTCACTACTGAGAATGCTGACCAAGTTAGCTTTCGAGAAATCTCATAATGGACTTCGCAAGGGAGCTATACTATTCTTTGCGATCTCCACATTCATTGAGTTTCTTTGTATTTTCCTCTACGCAATCTACTTCACCAAGTTGCCCATAGTGAAATATTATCGTTCAAAAGCAGCCTTAGAGGGATCAAAAACTGTTGCTGCTGACCTTGCTGCTGCTGGTATTCAAACAAAGACTAATGATCAAGGAGGATATGATAACAACCGAGGGGAGCGGTTGAGCAACAAACAATTGTTTCTTGAGAACCTTGATTATGCAGCTGGCTTATTTCTTATATATGTAGTAACATTGTCAATCTTCCCTGGATTCTTGTATGAAAATACTGGAACACATCAGTACCCAATTGTTTTGATTGCTATGTATAATGTGGTGGATCTCATATCAAGATATATTCCACTTGTGCAATGGCTGAAGTTGGAATCAAGAAAGTTTCTACTAATTGCAATCCTTTCTCGATTCTTGCTGATCCCAGCATTCTACTTTACAGCAAAATATGGTGACCAAGGATGGATGATCCTGCTCACCTCCTTCTTGGGACTCACCAATGGCTATCTCACTGGTCCTGAGCAGAATGCTTTGGGTAATTTGCTTGTCCTCTGTCTTTTGGGCGGCATATTTGCTGGGAAATATCACCCTGCAAGAGCACTTACACTGGTTTATCAACCGTTTGCANTTGGAACAATGGCAATACTGGCATACTACGAGTCAAAGATCAATACTAGAATGCGGAATTTGGCTGGATACACTCTTTTCTTTGCTAGTAACTTCTTGGTTCTTGTTTGGAATCTAGCAACATCAGGGAGAGGTGGAATTGGACCTTATATTGGTTTACTTGTGCTAGCTGCTTGTTTTGGAATAGCAGGTGGTCATGTGGAAGGTGGCATGGTAGGAGACCTGTGTTTCATGTGCCCTGAGTTTATCCAGTCTTACCTTGCTGGTTTGGCAGCATCAGGGGCTCTAATTTCATTACTGAGAATTGTGACCAAGTTAGCTTTTGAGAAATCTCATAATGGACTTCGCAAGGGAGCCTTACTATTCTTTGCACTCTCCACATTCATAGTGTTTCTTTGTATTGTCCTGTATGCTATCTACTTCGTCAAACTGCCCATAGTGAAATATTACCGTTCAAAAGCAGCCTTAGAGGGATCAAAAACTGTTTCAGCTGACCTTGCTGCTGCTGGCATTCAAATAAAGACTTATGATCAAGACAGATATGATAACAAACAAGGGGAGCGGTTGAGCAACAAACAATTGTTTCTTGAGAACCTTGATTATGCATTTGGCTTATTTCTTATATATGTTGTAACACTGTCAATCTTCCCTGGATTCTTGTATGAAAATACTGGAACACATCAGTTAGGCACCTGGTACCCAATTGTTTTGATTGCTATGTATAATGTGATATATTCCCCTTGTGCAATGGCTGAAGTTGGAATCAAGAAAGGGTCTACTAATTGCAATCTTTTCTCGATTCTTGCTGATCCCAGCATTCTACTTTACAGCAAAATATGGAGACCAAGGATGGATGATCCTGCTCACCTCTTTCTTGGGACTCACCAATGGTTATCTCACTGTGTGTGTTCTCACGGTGGCACCAAGAGGTTACAAGGCAAGGTCCGGAGCAGAATGCTTTGGGTGGAATATTTGTTGGGGTTGTTCTTGATTGGTTGTGGCTCATAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00122	229763	242273	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006810 transport

cellular_component
GO:0016021 integral component of membrane

molecular_function
GO:0005337 nucleoside transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000122s00010215.1	PF01733.13	Nucleoside_tran	152	367	4.70E-20
Glyur000122s00010215.1	PF01733.13	Nucleoside_tran	465	649	8.80E-17
Glyur000122s00010215.2	PF01733.13	Nucleoside_tran	126	413	3.30E-22

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.854
SRR1783600	control	0.844
SRR1783602	moderate drought stress	0.884
SRR1811619	moderate drought stress	0.895

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.907
DRR006520	Root Summer glycyrrhizin high producing strain	1.703
DRR006521	Root Winter glycyrrhizin high producing strain	6.475
DRR006522	Root Winter glycyrrhizin high producing strain	6.100
DRR006523	Root Summer glycyrrhizin low producing strain	0.748
DRR006524	Root Summer glycyrrhizin low producing strain	0.783
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.424
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.478

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.298
SRR2868004	Drought Stress (root)	1.411
SRR2967015	Control (root)	1.521

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.834
SRR9715740	Leaf	0.979
SRR9715741	Leaf	0.235
SRR9715739	Root	0.653
SRR9715742	Root	0.391
SRR9715743	Root	0.753

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.021
SRR8749028	MeJA induced 9h	1.654
SRR8749029	MeJA induced 9h	0.945
SRR8749030	Uninduced	0.902
SRR8749031	Uninduced	0.571
SRR8749032	Uninduced	1.416

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.397
SRR8400027	Control - Root	2.719