Gene detail information of Glyur000122s00010207.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G27310.1 | 1.00E-22 | B-box type zinc finger family protein |
| NR | XP_003545808.1 | 2.44E-58 | PREDICTED: zinc finger protein CONSTANS-LIKE 2-like [Glycine max] |
| Swissprot | tr|Q9LJB7|BBX32_ARATH | 1.00E-10 | B-box zinc finger protein 32 {ECO:0000303|PubMed:19920209} |
| trEMBL | tr|I1ME84|I1ME84_SOYBN | 9.00E-59 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA15G07140.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00122 | 205652 | 206083 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | Orphans |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000122s00010207.1 | PF00643.19 | zf-B_box | 2 | 40 | 4.10E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 33.247 |
| SRR1783600 | control | 35.883 |
| SRR1783602 | moderate drought stress | 8.984 |
| SRR1811619 | moderate drought stress | 9.398 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 13.237 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 13.113 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 70.430 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 72.079 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.173 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.463 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.743 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.397 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.455 |
| SRR2868004 | Drought Stress (root) | 3.420 |
| SRR2967015 | Control (root) | 1.110 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 11.142 |
| SRR9715740 | Leaf | 15.133 |
| SRR9715741 | Leaf | 24.922 |
| SRR9715739 | Root | 19.828 |
| SRR9715742 | Root | 12.875 |
| SRR9715743 | Root | 13.413 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.970 |
| SRR8749028 | MeJA induced 9h | 20.200 |
| SRR8749029 | MeJA induced 9h | 18.107 |
| SRR8749030 | Uninduced | 0.966 |
| SRR8749031 | Uninduced | 4.477 |
| SRR8749032 | Uninduced | 19.246 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 7.968 |
| SRR8400027 | Control - Root | 40.849 |