Gene detail information of Glyur000122s00010206 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G28120.1 | 6.00E-113 | |
| NR | XP_003545805.1 | 0 | PREDICTED: ubiquitin thioesterase otubain-like [Glycine max] |
| Swissprot | tr|Q8LG98|OTUBL_ARATH | 2.00E-140 | Ubiquitin thioesterase otubain-like |
| trEMBL | tr|I1ME83|I1ME83_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA15G07130.3} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00122 | 198000 | 200895 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | OTU |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000122s00010206.1 | PF10275.4 | Peptidase_C65 | 84 | 329 | 4.70E-84 |
| Glyur000122s00010206.2 | PF10275.4 | Peptidase_C65 | 69 | 316 | 3.40E-84 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 27.174 |
| SRR1783600 | control | 27.270 |
| SRR1783602 | moderate drought stress | 19.444 |
| SRR1811619 | moderate drought stress | 19.297 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 57.799 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 58.047 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 54.826 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 52.217 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 42.582 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 42.533 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 20.877 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 21.498 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 69.805 |
| SRR2868004 | Drought Stress (root) | 60.589 |
| SRR2967015 | Control (root) | 69.310 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 57.428 |
| SRR9715740 | Leaf | 49.946 |
| SRR9715741 | Leaf | 64.976 |
| SRR9715739 | Root | 22.361 |
| SRR9715742 | Root | 70.060 |
| SRR9715743 | Root | 58.314 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 50.232 |
| SRR8749028 | MeJA induced 9h | 34.630 |
| SRR8749029 | MeJA induced 9h | 35.507 |
| SRR8749030 | Uninduced | 27.056 |
| SRR8749031 | Uninduced | 12.232 |
| SRR8749032 | Uninduced | 16.696 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 80.797 |
| SRR8400027 | Control - Root | 89.704 |