Gene detail information of Glyur000122s00010205 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G27280.1 | 4.00E-30 | Calcium-binding EF-hand family protein |
| NR | KHN19089.1 | 3.27E-67 | Calcium-binding protein PBP1 [Glycine soja] |
| Swissprot | tr|Q9LSQ6|PBP1_ARATH | 2.00E-35 | Calcium-binding protein PBP1 |
| trEMBL | tr|I1M2E4|I1M2E4_SOYBN | 1.00E-67 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G32180.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00122 | 195231 | 195575 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000122s00010205.1 | PF13833.1 | EF-hand_8 | 42 | 94 | 6.60E-20 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 13.198 |
| SRR1783600 | control | 12.166 |
| SRR1783602 | moderate drought stress | 10.363 |
| SRR1811619 | moderate drought stress | 11.156 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.639 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.791 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.180 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.316 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.921 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.152 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.276 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.216 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.556 |
| SRR2868004 | Drought Stress (root) | 1.335 |
| SRR2967015 | Control (root) | 1.174 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 14.717 |
| SRR9715740 | Leaf | 8.444 |
| SRR9715741 | Leaf | 7.976 |
| SRR9715739 | Root | 51.225 |
| SRR9715742 | Root | 25.273 |
| SRR9715743 | Root | 34.431 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 9.351 |
| SRR8749028 | MeJA induced 9h | 10.501 |
| SRR8749029 | MeJA induced 9h | 6.519 |
| SRR8749030 | Uninduced | 10.304 |
| SRR8749031 | Uninduced | 0.564 |
| SRR8749032 | Uninduced | 2.384 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.917 |
| SRR8400027 | Control - Root | 1.380 |