Gene detail information of Glyur000122s00010203 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G11330.2 | 1.00E-94 | S-locus lectin protein kinase family protein |
| NR | XP_006595417.1 | 0 | PREDICTED: uncharacterized protein LOC100801910 [Glycine max] |
| Swissprot | tr|Q9SXB4|Y1130_ARATH | 5.00E-117 | G-type lectin S-receptor-like serine/threonine-protein kinase At1g11300 (Precursor) |
| trEMBL | tr|K7M1R3|K7M1R3_SOYBN | 0 | Serine/threonine-protein kinase {ECO:0000256|PIRNR:PIRNR000641} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00122 | 184235 | 187677 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000122s00010203.1 | PF01453.19 | B_lectin | 75 | 186 | 1.80E-29 |
| Glyur000122s00010203.1 | PF00954.15 | S_locus_glycop | 213 | 321 | 1.20E-24 |
| Glyur000122s00010203.1 | PF08276.6 | PAN_2 | 356 | 413 | 5.00E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.505 |
| SRR1783600 | control | 1.540 |
| SRR1783602 | moderate drought stress | 0.957 |
| SRR1811619 | moderate drought stress | 0.890 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.307 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.313 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.576 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.283 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.227 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.017 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.615 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.608 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.107 |
| SRR2868004 | Drought Stress (root) | 9.189 |
| SRR2967015 | Control (root) | 7.954 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 16.935 |
| SRR9715740 | Leaf | 8.935 |
| SRR9715741 | Leaf | 23.519 |
| SRR9715739 | Root | 2.029 |
| SRR9715742 | Root | 7.665 |
| SRR9715743 | Root | 6.914 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 9.985 |
| SRR8749028 | MeJA induced 9h | 7.600 |
| SRR8749029 | MeJA induced 9h | 3.259 |
| SRR8749030 | Uninduced | 4.235 |
| SRR8749031 | Uninduced | 1.053 |
| SRR8749032 | Uninduced | 0.917 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.553 |
| SRR8400027 | Control - Root | 5.396 |