Gene detail information of Glyur000122s00010202 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G22870.1 | 1.00E-42 | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family |
| NR | XP_003545799.1 | 1.35E-116 | PREDICTED: uncharacterized protein At1g08160 [Glycine max] |
| Swissprot | tr|Q8VZ13|Y1816_ARATH | 8.00E-34 | Uncharacterized protein At1g08160 |
| trEMBL | tr|K7M1R4|K7M1R4_SOYBN | 4.00E-112 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G32226.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00122 | 179556 | 180161 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000122s00010202.1 | PF03168.8 | LEA_2 | 77 | 176 | 3.60E-17 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.760 |
| SRR1783600 | control | 2.735 |
| SRR1783602 | moderate drought stress | 2.721 |
| SRR1811619 | moderate drought stress | 2.784 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.631 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.776 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.368 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.359 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.036 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.083 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.688 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.418 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 34.879 |
| SRR2868004 | Drought Stress (root) | 26.714 |
| SRR2967015 | Control (root) | 25.109 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.967 |
| SRR9715740 | Leaf | 1.031 |
| SRR9715741 | Leaf | 1.257 |
| SRR9715739 | Root | 2.226 |
| SRR9715742 | Root | 7.723 |
| SRR9715743 | Root | 6.557 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 13.716 |
| SRR8749028 | MeJA induced 9h | 3.755 |
| SRR8749029 | MeJA induced 9h | 4.888 |
| SRR8749030 | Uninduced | 0.381 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.160 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 8.102 |
| SRR8400027 | Control - Root | 7.870 |