Gene detail information of Glyur000122s00010182 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G22104.1 | 5.00E-74 | Phototropic-responsive NPH3 family protein |
| NR | XP_006594649.1 | 0 | PREDICTED: BTB/POZ domain-containing protein At3g22104 [Glycine max] |
| Swissprot | tr|Q9C5J4|Y3210_ARATH | 1.00E-91 | BTB/POZ domain-containing protein At3g22104 |
| trEMBL | tr|I1M2G6|I1M2G6_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G32390.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00122 | 63430 | 65322 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000122s00010182.1 | PF03000.9 | NPH3 | 173 | 399 | 2.40E-50 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.126 |
| SRR1783600 | control | 0.144 |
| SRR1783602 | moderate drought stress | 0.161 |
| SRR1811619 | moderate drought stress | 0.206 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.209 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.204 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.281 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.146 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.514 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.421 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.689 |
| SRR2868004 | Drought Stress (root) | 3.638 |
| SRR2967015 | Control (root) | 3.389 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.389 |
| SRR9715740 | Leaf | 1.652 |
| SRR9715741 | Leaf | 2.674 |
| SRR9715739 | Root | 0.310 |
| SRR9715742 | Root | 0.398 |
| SRR9715743 | Root | 0.400 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.384 |
| SRR8749028 | MeJA induced 9h | 0.088 |
| SRR8749029 | MeJA induced 9h | 0.011 |
| SRR8749030 | Uninduced | 0.029 |
| SRR8749031 | Uninduced | 0.051 |
| SRR8749032 | Uninduced | 0.027 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.860 |
| SRR8400027 | Control - Root | 3.725 |