Gene detail information of Glyur000122s00010175 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G56260.1 | 1.00E-66 | Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase |
| NR | KEH36473.1 | 3.99E-94 | regulator of ribonuclease activity protein A [Medicago truncatula] |
| COG | YP_004685951.1 | 4.00E-63 | ribonuclease E (RNase E) inhibitor protein RraA [Cupriavidus necator N-1] |
| Swissprot | tr|Q9FH13|RRAA3_ARATH | 4.00E-84 | Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3 |
| trEMBL | tr|A0A072V558|A0A072V558_MEDTR | 1.00E-94 | 4-hydroxy-4-methyl-2-oxoglutarate aldolase {ECO:0000256|RuleBase:RU004338} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00122 | 39914 | 40543 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000122s00010175.1 | PF03737.10 | Methyltransf_6 | 6 | 155 | 2.80E-41 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.735 |
| SRR1783600 | control | 0.618 |
| SRR1783602 | moderate drought stress | 1.034 |
| SRR1811619 | moderate drought stress | 1.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.882 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.877 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.403 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.220 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.786 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.674 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.618 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.557 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 7.221 |
| SRR2868004 | Drought Stress (root) | 15.102 |
| SRR2967015 | Control (root) | 13.826 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 28.681 |
| SRR9715740 | Leaf | 18.283 |
| SRR9715741 | Leaf | 25.470 |
| SRR9715739 | Root | 1.353 |
| SRR9715742 | Root | 2.385 |
| SRR9715743 | Root | 1.201 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.154 |
| SRR8749028 | MeJA induced 9h | 2.619 |
| SRR8749029 | MeJA induced 9h | 1.277 |
| SRR8749030 | Uninduced | 3.843 |
| SRR8749031 | Uninduced | 5.020 |
| SRR8749032 | Uninduced | 6.131 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.651 |
| SRR8400027 | Control - Root | 5.200 |