Gene detail information of Glyur000122s00010172 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G11530.1 | 1.00E-44 | C-terminal cysteine residue is changed to a serine 1 |
| NR | XP_004485661.1 | 6.52E-72 | PREDICTED: thioredoxin-like protein CXXS1-like isoform X1 [Cicer arietinum] |
| COG | YP_004459477.1 | 2.00E-16 | thioredoxin [Acidianus hospitalis W1] |
| Swissprot | tr|Q8LDI5|CXXS1_ARATH | 3.00E-56 | Thioredoxin-like protein CXXS1 |
| trEMBL | tr|B7FIZ6|B7FIZ6_MEDTR | 5.00E-72 | Thioredoxin {ECO:0000256|PIRNR:PIRNR000077} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00122 | 21721 | 24672 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000122s00010172.1 | PF00085.15 | Thioredoxin | 25 | 113 | 4.50E-22 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 17.348 |
| SRR1783600 | control | 17.989 |
| SRR1783602 | moderate drought stress | 45.554 |
| SRR1811619 | moderate drought stress | 45.391 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 49.131 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 49.236 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 84.493 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 83.152 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 153.147 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 153.104 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 20.207 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 19.815 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 49.297 |
| SRR2868004 | Drought Stress (root) | 74.783 |
| SRR2967015 | Control (root) | 153.688 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 57.030 |
| SRR9715740 | Leaf | 49.210 |
| SRR9715741 | Leaf | 51.916 |
| SRR9715739 | Root | 96.421 |
| SRR9715742 | Root | 45.421 |
| SRR9715743 | Root | 49.837 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 141.707 |
| SRR8749028 | MeJA induced 9h | 300.178 |
| SRR8749029 | MeJA induced 9h | 371.580 |
| SRR8749030 | Uninduced | 341.166 |
| SRR8749031 | Uninduced | 867.538 |
| SRR8749032 | Uninduced | 1185.628 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 33.566 |
| SRR8400027 | Control - Root | 43.127 |