Gene detail

Gene detail information of Glyur000122s00010171

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G54680.1	2.00E-62	basic helix-loop-helix (bHLH) DNA-binding superfamily protein
NR	XP_008224874.1	1.45E-99	PREDICTED: transcription factor ILR3-like [Prunus mume]
Swissprot	tr\|Q9FH37\|ILR3_ARATH	9.00E-81	Transcription factor ILR3
trEMBL	tr\|M5WIN3\|M5WIN3_PRUPE	6.00E-100	Uncharacterized protein {ECO:0000313\|EMBL:EMJ13136.1}

Sequence

Transcript Sequence

>Glyur000122s00010171.1
ACTCATTTTGTTTAATTTTATTCGACGTCAATTTCGAAGACTGAAAAAGGTGGGAGGAGATGCAAAGGGAAGCAACGTGGTGGGTATGTATGTGGTGGAGAATGAATTGATGGGAGTAATGGTGTCGCATCAGGGGTCTCTCAGATCATATGAATATGAATATGAATATGAATATGAATATATGAAATTCGCCACTCCCAGTCTCCTTTGTCATATTTTGCGCACTTAGCAACACTCTCCATTCATTCAACCATTCAATCATCATCGCTCATCACATCTTGTGACTGACATTTTCAACTCCGGCGTAAAGTGTAACCCTGTTNGCCGCCGGAGATGGCGAATTGCGATTGGGTGTTGGATTATGATTACTTGGAACTTGACAACCCCAATTTCTCTTGGTCCTCCCCTCCTCCCCCTACCCTCAGCCTCAGTGTGGAGCTAGATGATTCAAATGGAAATTTTGATGGTTTCAAGGAAACTGGCTCAAGAAAACGCTTGAGGTCAGGATCCTGCAACACATCCGGTTCCAAAGCATGTAGAGAGAAAATGCGAAGGGATCGGCTAAATGACAGATTTTTGGAACTGGGTTCTATCCTGGACCCTGGAAGGCCTCCCAGAATGGACAAGGCGGCTATATTGAGTGATGCAGTTCGAGTGGTGTCTCAGTTACGAGGGGAGGCAGAGAAGCTGAGAGAGTCTACCGAGAATCTGCAGGATAAAATCAATGAATTGAAGGCTGAGAAAAATGAGCTTCGTGATGAGAAGCAGAGACTAAAAGCAGAGAAAGATAACCTTGAGCAGAAGCTTAAAGCCTTGAGTTCACAACCGAGCTTCCTGCACCACCCCTCCACCCTCCCAGGTGCNTTTCCTGCACCAGGACAAGTTGTTGGTAGCAGCAAGCTTGTGCCTTTCATGGGTTACCCAGGAGCTTCCATGTGGCAGTTTTTACCACCTGCTGCTGTTGATACCTCTCAGGACCATGGTAGTTTGAACCCCATGTATTTCCCTGATCCGTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00122	17408	20476	-

Gene family

Gene family	subfamily
Transcription Factors Family	bHLH

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0046983 protein dimerization activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000122s00010171.1	PF00010.21	HLH	66	112	1.40E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	11.679
SRR1783600	control	10.674
SRR1783602	moderate drought stress	11.933
SRR1811619	moderate drought stress	9.763

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	19.734
DRR006520	Root Summer glycyrrhizin high producing strain	20.902
DRR006521	Root Winter glycyrrhizin high producing strain	2.281
DRR006522	Root Winter glycyrrhizin high producing strain	2.920
DRR006523	Root Summer glycyrrhizin low producing strain	20.350
DRR006524	Root Summer glycyrrhizin low producing strain	20.050
DRR006525	Leaf Summer glycyrrhizin high producing strain	28.361
DRR006526	Leaf Summer glycyrrhizin high producing strain	25.374

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	17.274
SRR2868004	Drought Stress (root)	15.451
SRR2967015	Control (root)	9.564

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	25.858
SRR9715740	Leaf	36.733
SRR9715741	Leaf	23.635
SRR9715739	Root	6.670
SRR9715742	Root	23.392
SRR9715743	Root	21.910

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.538
SRR8749028	MeJA induced 9h	5.537
SRR8749029	MeJA induced 9h	4.969
SRR8749030	Uninduced	2.561
SRR8749031	Uninduced	1.189
SRR8749032	Uninduced	3.387

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	15.864
SRR8400027	Control - Root	15.029