Gene detail information of Glyur000122s00010168 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G33393.1 | 8.00E-06 | |
| NR | XP_003599949.1 | 1.22E-25 | GRF zinc finger containing protein [Medicago truncatula] |
| trEMBL | tr|A0A072VL81|A0A072VL81_MEDTR | 6.00E-26 | GRF zinc finger protein {ECO:0000313|EMBL:KEH42602.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00122 | 12641 | 13065 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000122s00010168.1 | PF06839.7 | zf-GRF | 23 | 66 | 3.40E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.832 |
| SRR1783600 | control | 0.503 |
| SRR1783602 | moderate drought stress | 0.811 |
| SRR1811619 | moderate drought stress | 0.498 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.195 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.136 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.253 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.309 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.631 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.251 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.811 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.655 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 11.376 |
| SRR2868004 | Drought Stress (root) | 8.317 |
| SRR2967015 | Control (root) | 5.667 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.507 |
| SRR9715740 | Leaf | 3.582 |
| SRR9715741 | Leaf | 2.756 |
| SRR9715739 | Root | 1.994 |
| SRR9715742 | Root | 1.461 |
| SRR9715743 | Root | 2.098 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 14.651 |
| SRR8749028 | MeJA induced 9h | 7.119 |
| SRR8749029 | MeJA induced 9h | 7.187 |
| SRR8749030 | Uninduced | 0.294 |
| SRR8749031 | Uninduced | 0.016 |
| SRR8749032 | Uninduced | 0.345 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 9.779 |
| SRR8400027 | Control - Root | 9.133 |