Gene detail information of Glyur000122s00010166 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G14610.1 | 2.00E-57 | pathogenesis-related gene 1 |
| NR | AFK37568.1 | 5.39E-103 | unknown [Medicago truncatula] |
| COG | YP_003523423.1 | 6.00E-32 | SCP-like extracellular [Sideroxydans lithotrophicus ES-1] |
| Swissprot | tr|P33154|PR1_ARATH | 7.00E-72 | Pathogenesis-related protein 1 (Precursor) |
| trEMBL | tr|I3SBC6|I3SBC6_MEDTR | 2.00E-103 | Uncharacterized protein {ECO:0000313|EMBL:AFK37568.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00122 | 8573 | 9145 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000122s00010166.1 | PF00188.21 | CAP | 39 | 157 | 1.10E-20 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.828 |
| SRR1783600 | control | 4.626 |
| SRR1783602 | moderate drought stress | 2.596 |
| SRR1811619 | moderate drought stress | 2.647 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.947 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.017 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.386 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.191 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 167.232 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 164.380 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 217.581 |
| SRR2868004 | Drought Stress (root) | 529.817 |
| SRR2967015 | Control (root) | 533.796 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 440.105 |
| SRR9715740 | Leaf | 103.116 |
| SRR9715741 | Leaf | 704.603 |
| SRR9715739 | Root | 8.709 |
| SRR9715742 | Root | 9.076 |
| SRR9715743 | Root | 6.268 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 12.330 |
| SRR8749028 | MeJA induced 9h | 80.532 |
| SRR8749029 | MeJA induced 9h | 24.321 |
| SRR8749030 | Uninduced | 73.560 |
| SRR8749031 | Uninduced | 209.988 |
| SRR8749032 | Uninduced | 140.762 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 137.272 |
| SRR8400027 | Control - Root | 122.110 |