Gene detail information of Glyur000121s00009734.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G01260.3 | 1.00E-149 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
| NR | XP_003553791.1 | 0 | PREDICTED: transcription factor bHLH13-like [Glycine max] |
| Swissprot | tr|Q9LNJ5|BH013_ARATH | 0 | Transcription factor bHLH13 |
| trEMBL | tr|K7N0C2|K7N0C2_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G44570.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00121 | 293410 | 295284 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | bHLH |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000121s00009734.1 | PF14215.1 | bHLH-MYC_N | 53 | 236 | 2.50E-42 |
| Glyur000121s00009734.1 | PF00010.21 | HLH | 442 | 488 | 7.70E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.848 |
| SRR1783600 | control | 2.809 |
| SRR1783602 | moderate drought stress | 2.698 |
| SRR1811619 | moderate drought stress | 2.744 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 25.193 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 24.678 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.326 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.084 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 20.325 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 19.600 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 11.601 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 11.724 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 16.063 |
| SRR2868004 | Drought Stress (root) | 20.869 |
| SRR2967015 | Control (root) | 23.161 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 127.148 |
| SRR9715740 | Leaf | 118.695 |
| SRR9715741 | Leaf | 153.301 |
| SRR9715739 | Root | 56.363 |
| SRR9715742 | Root | 77.845 |
| SRR9715743 | Root | 71.474 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.432 |
| SRR8749028 | MeJA induced 9h | 0.495 |
| SRR8749029 | MeJA induced 9h | 0.403 |
| SRR8749030 | Uninduced | 0.481 |
| SRR8749031 | Uninduced | 0.429 |
| SRR8749032 | Uninduced | 0.592 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 13.802 |
| SRR8400027 | Control - Root | 16.226 |