Gene detail

Gene detail information of Glyur000121s00009726.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G61790.1	1.00E-145	Protein with RING/U-box and TRAF-like domains
NR	CCG06551.1	0	E3 ubiquitin ligase [Lotus japonicus]
Swissprot	tr\|Q84JL3\|SINA3_ARATH	0	E3 ubiquitin-protein ligase SINAT3
trEMBL	tr\|H8WVC3\|H8WVC3_LOTJA	0	E3 ubiquitin-protein ligase {ECO:0000256\|RuleBase:RU201113}

Sequence

Transcript Sequence

>Glyur000121s00009726.1
CCCATAAATAATAAATCACTACTTGATCAGTTGATCTTGATCTGCATTCCACTTGGTCTTCAATCTCTATCCTCTACGATCTGTTCCTTGATCTTTCCATTGGCGTCATAACTTCTCTCTTTCCGGTTTTTGTTGGCGAAGTCCCGAAAACCGTTGGATTTCAATTTTCAATCAAAGGGTCCTCATGACTCGGACACCGATGCATATCCTTTGATGTCCCAAAAAGACCCAGGAAGAAAAGCATCAATTTTTGTAAGCAATCAAGTTAAAATTCCTTGCTTTTTCTTCCTTCTCTTCTACCCTTGTCTTAAAACTCATTGAATCTACCCACCTGAACCACCATAGCTCAAATTCCGCTGTTCTTCTTCTTCTCTTGCTGCTGGATATACATGATTCGAGAGTGAATCACACCCACCAACCATAAATTAACCATATTGGGGTTTAGAGAATGGAATCGAGTAGCCTTGATAGCAGTATATTATCGTTGACTATGATGGAAGAGGATGAGCATCCCCATCAGTTTTCTTCTTCAATCTCGAAGCTACATAGCAATGCTCCCACCACTACCAGTGTCCATGACCTTCTCGAATGCCCCGTCTGCACCAATTCAATGTACCCTCCAATTCACCAGTGCCACAATGGGCATACCCTTTGTTCAACATGTAAGACAAGGGTACACAACCGATGCCCGACTTGCAGGCAGGAACTGGGTGATATAAGGTGTCTGGCATTGGAGAAGATAGCAGAATCACTAGAACTACCCTGCAGATACATCTCTCTTGGGTGTCCAGAGATATTTCCCTATTACAGCAAACTCAAACACGAGGCCACTTGTAACTTGAGACCATACAACTGCCCTTATGCTGGCTCAGACTGCTCTGTTGTTGGGGATATCCCATACCTTGTTTCCCATTTAAGGGATGACCACAGGGTTGATATGCATTCTGGATCCACTTTTAACCATCGCTATGTCAAGTCTAATCCCATGGAAGTAGAAAATGCTACGTGGATGCTAACGGTATTCCATTGTTTTGGTCAGTATTTTTGCCTGCATTTTGAGGCCTTCCAGCTTGGAATGGCTCCTGTATACATGGCATTCCTGCGATTCATGGGCGATGAGAGAGAGGCACGGAACTACAGCTACAGCCTGGAGGTGGGAGGGAATGGACGTAAGCTGACTTTTGAAGGGAGTCCAAGAAGCATTAGGGATAGCCATAAGAAGGTCAAGGACAGCCATGATGGCCTCATCATATACCGCAACATGGCGCTTTTCTTCTCATGTGGGGACAGGAAAGAGTTGAAGCTACGGGTAACGGGAAGGATATGGAAAGAACAGCAGAACCCTGAAGGTGTTGTGTGCATACCCAACATGTGTACCTAGGCTGATGCTGTTTCTTGCTGATGTAGATAATTTTGGAAAATCAAATCTCAGTGTATGCCTAGTTATTAGTCAATGGTTATGGAGGTTTCAATTTACAAGCAAAATAGAGCAACTCTAACCAAGATATTTTGTCAAATATTTGGTCCCACGTGTATCCTATGATATGCTGCTAAATCCCTTGAGACAGTTTTTCTTATAAAAAGAAATATTTAAATTTGGGCTGCTCATTGGGTTTTCTATGCTACATTTAAACATGCCTCGTTAGGTGTTTCCATAGAATTAATATTGTTCAATCCGGTCTCTTCCTTAGACGATTGAGCTACTACTTCATACCGGTGGAGAGATAGTTGTGGATACTTACAACTTGCAAAGGAATTCCATTCCAACGTTTGAGTTAATAGGAATTCCAGCAGAATAACATTAGGAATTGCAGGCGAGTTATTGCAAGATTATCTATGGTTGAGCTCCTCCAATCCATTACTCATAGGGTGCAGAGGAACATTAGATAGCTTGACGGTTGTGTCATGTCTATGCTAGGACATGAACAACCGAGATTCCCTATGGGCATAGGTTGAGACGTGTGTCCGAGGAAGAATTTGGAATCAAGTGAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00121	251509	255067	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K04506	SIAH1	EC:2.3.2.27	Ubiquitin mediated proteolysis	map04120
			MAPK signaling pathway - fly	map04013
			Wnt signaling pathway	map04310
			p53 signaling pathway	map04115

Gene Ontology

biological_process

GO:0006511 ubiquitin-dependent protein catabolic process

GO:0007275 multicellular organism development

GO:0016567 protein ubiquitination

cellular_component
GO:0005634 nucleus

molecular_function

GO:0004842 ubiquitin-protein transferase activity

GO:0005515 protein binding

GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000121s00009726.1	PF03145.11	Sina	90	289	4.40E-72

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	17.202
SRR1783600	control	17.163
SRR1783602	moderate drought stress	19.850
SRR1811619	moderate drought stress	19.649

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	13.760
DRR006520	Root Summer glycyrrhizin high producing strain	13.524
DRR006521	Root Winter glycyrrhizin high producing strain	26.587
DRR006522	Root Winter glycyrrhizin high producing strain	26.275
DRR006523	Root Summer glycyrrhizin low producing strain	11.516
DRR006524	Root Summer glycyrrhizin low producing strain	11.896
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.493
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.425

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	14.144
SRR2868004	Drought Stress (root)	15.747
SRR2967015	Control (root)	17.682

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.558
SRR9715740	Leaf	8.048
SRR9715741	Leaf	7.526
SRR9715739	Root	11.416
SRR9715742	Root	10.722
SRR9715743	Root	10.791

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	10.436
SRR8749028	MeJA induced 9h	14.544
SRR8749029	MeJA induced 9h	8.338
SRR8749030	Uninduced	6.133
SRR8749031	Uninduced	7.264
SRR8749032	Uninduced	6.970

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	15.755
SRR8400027	Control - Root	14.937