Gene detail

Gene detail information of Glyur000121s00009722

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G61740.2	0	SET domain protein 14
NR	XP_004494815.1	0	PREDICTED: histone-lysine N-methyltransferase ATX3-like [Cicer arietinum]
COG	YP_003280830.1	8.00E-26	nuclear protein SET [Comamonas testosteroni CNB-2]
Swissprot	tr\|Q9M364\|ATX3_ARATH	0	Histone-lysine N-methyltransferase ATX3
trEMBL	tr\|A0A072U651\|A0A072U651_MEDTR	0	Histone-lysine N-methyltransferase ATX3 {ECO:0000313\|EMBL:KEH24628.1}

Sequence

Transcript Sequence

>Glyur000121s00009722.1
ATGATAATTAAGCGCACTATGAAAGGTGAAATGCAGAACCTCAAGCGGTGTAAGCTAGAAGAAGAAGACAAGGACTGTGCGTATTCGGCGATTCAGAAGAAGCAGAGGGTGAACGGGTTTTGTTCTCTCGGTGACGGTGAAGACTGGACCAACGGTTCCGGCGAGGTCTACTCCAATTCTAATTCCACGGAGTTGAATGCTGCAAGTATTAAAGCTTCCCCACTGTTGCGATCATCGAGAGGCCGCGTTCAAGTGCTTCCGTCCAGGTTCAGTGACTCAGTTCTCGATACCTGGACGTACAAGGGCAACGGACGAATCAAAATAGAGGACAAGAGATCCGAGTTTGAAGACATTGGAATGGGATTTGTGAAACAAGGAGGAAAGGGAAAGGAAAATAAATGCGGCTCAAAAAGTTCTGTTTGTTTTCAGTATTCCGCTGAAACAGAATTGGGTGGATTAGATCCCAACGCTTTTGACTACGAGAAGCATGCCAACTCGTTTAAGAGCATTAAAACGACGGTTAGTGGGAGTCGTTCAATGTTGGTTAAACAGAAGACAGAAAGTAAAAAGAGGAAGGACGTTTACAAACTGGAGGATTTTGCTTTGGGTGATATAGTATGGGCAAAATGTGGGAAGCGTTATCCGGCATGGCCTGCCGTGGTGATTGATCCCATCTTGCAAGCTCCCAAATCCGTCCTCAGCTGTTGTGTTCCCGGTGCGATTTGCGTTATGTTTTTCGGAATTGTGGTGGGCAATGGGCAGGACTATGCGTGGGCGAAGCAGGGGATGATATTCCCCTTCTTGGAATTCATGGACAGATTCCAGGGGCAGACGCGATTGTACAAGAGCAAACCGAGTGACTTTCACATGGCAATGGAGGAGGCAATGTTNGCAGAAGATGGCATTCTGGACTCGCACTTGGGAACTGAGCAAATTACGGAGGGTGCAGGCTCCTATGCTGACCAGGAATGTTGCCACCAAGACCAGGATACAATATCTTGTGCTGGCTGTGGTTTGATGTTGCCATGCAAAACCATGAAGAAGATAAAGGATTCAAGCTGTGCTCCTAAGTATTATTGTAAACCTTGTGCAAAGTTACTAAAATCAAAACAATGTTGTGGCATTTGCAAAAAGATTTGGCACCATTCAGACGGTGGGAATTGGGTATGCTGTGATGGCTGTAATGTTTGGGTGCATGCTGAGTGTGACAAAATTTCCAGCACACTTTTCAAGGATCTGGAAAATATGGATTACTATTGCCCAGATTGCAAGGGAAAGTTTAACTGTAAATTATCAGCATCACAAACATACAAACCAAAAATCAATTCATTAGAGAATAGCCAAAAACCTGTGTTACCTGAAAAGCTAGCGGTGGTGTGCAATGGCATGAAAGGAATTTATATTCCAAAGCTTCATTTAGTTATGTGCANGTGTAGCTCGTGTGGTTCAAAGAAGCAGGCATTGGCAGAATGGGAACGGCATGCAGGTTGCAGAGCCAAAAAATGGAAATATAGTGTGAAAGTAGAAAGCACAATGCAACCACTAATAGAATGGATCACCGAACACAATTCCCAAGCTGGAATTTCCCTGCAGTTAGATCAGAAACGGGTGCTTTCCTTTTTGCAAGAGAAGTATGAGCCAGTTTATGCAAAATGGACCACAGAAAGATGTGCGATTTGCAGATGGGTTGATGATTGGGAAGATAACAAAATTATTATCTGTAACAGGTGCCAAATTGCAGTCCACCAAGAATGCTATGGGGCAAAGAATGTTGAAGATTTTACTTCCTGGGTTTGCAGAGTCTGTGAAACTCCTCATGTTGAAAGAGAATGTGGTGCACTGAAGCCAACTGATGTGGAGTTGTTGTGGGTTCACGTAACATGTGCTTGGTTTCGGCCTGAAGTTCTTTTCCAAAACCATGAGGCAATGGAACCTGCCTCTGGAATCCTTAAGATTCCTCCTAATTCCTTTTCGAAGACTTGCGTGATCTGTAAACAAATCCATGGTTCCTGTACAAGTTGTTGCAAGTGTGCCACATATTTTCATGTGATGTGCGCGTCAAGAATGGGATATAGCATGGAATTGCGTTCTACAGTGAAGAATGGGGCTCAAATAACAAAGACACTAATATATTGTGCAGTTCACAGGGTCCCAAATCCAGATTCAGTACTGGTTGTGCATACACCCCTGGGGGTATTCTCTCCAAGAAATTCGCTTCAAAATCACAAGGGGTGCTTTAGAGGATCAAGGCTTGTTTCATCATCAAATAACATAGAACTCCTTGAATCTCCAACCTCTGAAAGTTATGACGTTGAGCAACTATCTGCTGCCAGGTGTCGTGTGTACATAAGGTCTTCCAATAAGAAGGATGATGCTCGCATAATTCACTTGCTAGGGGGACCAAACCTTCATTCTTTGAGTGCAATAGCTCAATTGAACAGCAATAAGGATGCTGAAGTATTTTCCTCTTTCAAGGAACGTCTTCACCATTTACAGAAAACGGAAAGTTGTAGAGTTTGCCTTGGAAAATCAGGTATTCATGGGTGGGGCCTCTTTGCTCGTAGAGATTTGCAAGAAGGAGAAATGGTTGTTGAGTATCGTGGTGAGCAGGTAAGGCGTAGTGTTGCTGATCTGAGGGAAGCGAAGTACCGTTCAGAAGGCAAAGATTGCTACCTGTTCAAGATTAGTGAGGAAGTGGTGATTGATGCAACAGATAAGGGCAATATTGCACGTCTAATAAACCATTCTTGCATGCCAAACTGCTATGCAAGGATTATGTGTTTGGGTGATCAGGAGAGCCGGATTGTTCTTATTGCCAAGACCAAAGTTTCTGCTGGTGAAGAACTAACGTATGATTACTTGTTCGATCCAGATGAGCGGGATGAACTCAAGGTTCCCTGCCACTGCAAAGCCCCCAATTGTAGGAAATTTATGAACTAG

Protein Sequence

>Glyur000121s00009722.1
MIIKRTMKGEMQNLKRCKLEEEDKDCAYSAIQKKQRVNGFCSLGDGEDWTNGSGEVYSNSNSTELNAASIKASPLLRSSRGRVQVLPSRFSDSVLDTWTYKGNGRIKIEDKRSEFEDIGMGFVKQGGKGKENKCGSKSSVCFQYSAETELGGLDPNAFDYEKHANSFKSIKTTVSGSRSMLVKQKTESKKRKDVYKLEDFALGDIVWAKCGKRYPAWPAVVIDPILQAPKSVLSCCVPGAICVMFFGIVVGNGQDYAWAKQGMIFPFLEFMDRFQGQTRLYKSKPSDFHMAMEEAMXAEDGILDSHLGTEQITEGAGSYADQECCHQDQDTISCAGCGLMLPCKTMKKIKDSSCAPKYYCKPCAKLLKSKQCCGICKKIWHHSDGGNWVCCDGCNVWVHAECDKISSTLFKDLENMDYYCPDCKGKFNCKLSASQTYKPKINSLENSQKPVLPEKLAVVCNGMKGIYIPKLHLVMCXCSSCGSKKQALAEWERHAGCRAKKWKYSVKVESTMQPLIEWITEHNSQAGISLQLDQKRVLSFLQEKYEPVYAKWTTERCAICRWVDDWEDNKIIICNRCQIAVHQECYGAKNVEDFTSWVCRVCETPHVERECGALKPTDVELLWVHVTCAWFRPEVLFQNHEAMEPASGILKIPPNSFSKTCVICKQIHGSCTSCCKCATYFHVMCASRMGYSMELRSTVKNGAQITKTLIYCAVHRVPNPDSVLVVHTPLGVFSPRNSLQNHKGCFRGSRLVSSSNNIELLESPTSESYDVEQLSAARCRVYIRSSNKKDDARIIHLLGGPNLHSLSAIAQLNSNKDAEVFSSFKERLHHLQKTESCRVCLGKSGIHGWGLFARRDLQEGEMVVEYRGEQVRRSVADLREAKYRSEGKDCYLFKISEEVVIDATDKGNIARLINHSCMPNCYARIMCLGDQESRIVLIAKTKVSAGEELTYDYLFDPDERDELKVPCHCKAPNCRKFMN

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00121	229960	237717	-

Gene family

Gene family	subfamily
Transcription Factors Family	PHD

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005515 protein binding

GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000121s00009722.1	PF00855.12	PWWP	200	296	3.30E-16
Glyur000121s00009722.1	PF00628.24	PHD	373	425	7.20E-07
Glyur000121s00009722.1	PF13832.1	zf-HC5HC2H_2	599	715	9.70E-23
Glyur000121s00009722.1	PF00856.23	SET	848	953	2.10E-22

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.154
SRR1783600	control	1.140
SRR1783602	moderate drought stress	1.280
SRR1811619	moderate drought stress	1.283

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.698
DRR006520	Root Summer glycyrrhizin high producing strain	1.648
DRR006521	Root Winter glycyrrhizin high producing strain	1.140
DRR006522	Root Winter glycyrrhizin high producing strain	1.191
DRR006523	Root Summer glycyrrhizin low producing strain	0.627
DRR006524	Root Summer glycyrrhizin low producing strain	0.610
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.526
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.406

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.948
SRR2868004	Drought Stress (root)	4.162
SRR2967015	Control (root)	4.582

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.472
SRR9715740	Leaf	2.699
SRR9715741	Leaf	1.917
SRR9715739	Root	0.230
SRR9715742	Root	0.519
SRR9715743	Root	0.813

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.032
SRR8749028	MeJA induced 9h	1.872
SRR8749029	MeJA induced 9h	1.226
SRR8749030	Uninduced	0.541
SRR8749031	Uninduced	0.373
SRR8749032	Uninduced	0.235

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.981
SRR8400027	Control - Root	3.541