Gene detail

Gene detail information of Glyur000121s00009718

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G53130.1	0	cyclic nucleotide gated channel 1
NR	XP_003626568.1	0	Cyclic nucleotide-gated channel C [Medicago truncatula]
COG	YP_005071944.1	2.00E-26	cyclic nucleotide-binding protein [Arthrospira platensis NIES-39]
Swissprot	tr\|O65717\|CNGC1_ARATH	0	Cyclic nucleotide-gated ion channel 1
trEMBL	tr\|G7L436\|G7L436_MEDTR	0	Cyclic nucleotide-gated ion channel-like protein {ECO:0000313\|EMBL:AES82786.1}

Sequence

Transcript Sequence

>Glyur000121s00009718.1
CTCGGTCTTAATTCTTCCCTCCCTCTCTGTTTCCTTCCCCTTTCTATTTTTTTGTCATCATTTCATTACTGCAACAACACCCATATCTCTCTCTTTGAACTGTGAACGCTGCATATCAAGCCTCCTTTGGAAGCAACAAACTGCCCCACACAACACTGCATATGTAACTCTGCAGATATATATTTATTTATTGAAGACCTTGTGTTGTATTGAGTATTAGTGTTTGCTCGCTGCAAAGCTTACTTGTTCTCACTGGATGCAGAAGTAGCTTAACTTTAATCATGAATGCAAAGGGGCATAAATTTGTCAGGTTTGAGGACTGGAAATCAGAGTCATCTTTTAGTACAGAGCAAGAAGATTCTGTAAACAATGGAGATCACAAAAGAAAAGGCAGACCAAGTGTGGGTGCTGTTTTGAAGAGTATTGGAAGAAGAGTGGAGAGCGGGTCAGAGAAGATGAAGAGATTGAGAAGGTCTTCAGCAGCAGTACACCCTGTAAACAAAGGAGATGGACAAACAAAAAACTTGGCTTCTTCTAACCGCAAGATTCTTGATCCACAGGGGCCAATGCTTCAGAAATGGAACAAGATCTTTGTGATCACGTGTGTGATGGCAGTCTCTGTGGACCCGCTTTTCTTTTACATTCCTGTCATCGATGGCAAAAACAAATGTCTTGATCTAAATGGAGCATTGCAGATTACTGCCAGTGTTCTTCGCACCTTCTTTGATCTTTTCTACATTCTCCGCATAATCTTTCAGTTTCAAACGGGGTTTATTGCCCCTTCTTCTCGTGTCTTTGGAAGGGGTGAGCTGATTAAGGATCCTGCTGCCATAACCAAAAGATACTTAAGCTCCCACTTCATCATTGACATTGCATCAATTATTCCACTTCCACAGGTGGTTGTTTTAGCTATAATTCCAAACCTGAAAAAATCAGTTCCATTTGTAGCAAAGGATTTGCTGAAGTATATAGTATTAATCCAGTATGTGCCAAGACTTTGGCGGATCTATCCACTGTTCAAAGAAGTAACAAGAACTTCTGGCATATTGACAGAGACAGCATGGGCTGGGGCTGCTTATAACCTCTTTCTCTATATGCTAGCAAGTCATGTGGTTGGAGCTAACTGGTATATGCTATCAGTAGAATCAGAGGTGCGGTGCTGGAGCCGGGAGTTGAAGAATGCTTCGCACTTTCATGAATCATACTTGGCCTGTGGTACTAATAGTACCCNTGTCCTTCCAAACTGCTCTTTGGTTGACCCTGATCAAATCAATGACACAAACATCTTCAATTTTGGAATATTTTTCGATGCTATACAATCACGTGTGGTAGATTCAACAACTGATTTTCCTCAGAAGTTCTTCTACTGCTTTTGGTGGGGTTTGCGCAATTTAAGTTCTGTTGGACAAAACCTCAAGACAAGTACTTATGTCGTGGAGATAGCCTTTGCAATCTTCATTGCCATCTTTGGATTGGTTTTATTCGCATTACTTATTGGAAACATGCAGAAATATCTACAATCTACAACTGTCAGGGTGGAAGAGATGAGAGTGAAGAGGCGGGATGCAGAACGGTGGATGTCCCACCGTATGCTACCTGATAACTTGAAGCAAAGAATTAGAAGGTATGAACAGTACAAATGGCAAGAAAATAGGGGTGTTGAGGAGGAGGCATTGATTCGTAACCTCCCTAAAGATCTCAGAAGGGACATAAAGCGTCATCTTTGCTTGGCTTTAGTTAAAAAAGTGCCATTGTTTGAGAAAATGGATCAACAATTGTTGGATGCAATGTGTGATAGACTGAAGCCAGTCCTTTATACCGAGAAGAGCTGCATTGTTCGTGAAGAAGATCCAGTTGATGAGATGCTTTTCATTATGCGTGGAAAAGTTGCTACCACGACAACAAATGGTGGAAGAACTGGTTTCTTCAACTCCTTGTTGCTCATGGCTGGTGACTTCTGTGGAGAGGAGCTTCTAACATGGGCTTTGGATCCCAACTCCTCCTCAAATCTACCCATTTCAACTAGAACANTGGAAACTATATCAGAGGTTGAAGCCTTTGCTCTCATGGCTGATGACTTGAAGTTTGTTGCTTCCCAATTTCGACGTCTTATAAACAGCAAACAACTCCAACACACTTTCAGGTTCTATTCCCCACAATGGAAGACATGGGCTGCTTGTTTCATACAAGCAGCTTGGCGTCGATACTGCAAAAAGAAGATTGAGAGGTCATTGCGTGAAGCAGAAGACAAGCTACAAGATGCTTTGGCATATGAGGATGGCTCCACTATAAGCCTTGGTGCAACCATATATGCATCAAGGTTTGCTGCAAATGCATTACGAACCTTGAGAGAAAATAACAGACACAACAGAATGCCGCAAACGCTACTACCTCTGTTACCTCCAAAGCCAGCTGAGCCTGATTTTAGTGCTAAGAATCACTAGGGGTGCAATAGTTTTAAACAATTTAATGTGAGTTCAATTATAGAATAGGAGCACGGTTAGCATATCCATACTTCATTGTATGCATATACATGTAATTCTGTAAAGTTTGTTGGTTCTGAAGGATAAGTATAGTCCATTTTGTNTTCATGCTGAAGGGGGAGTAGCTGAAGAATAAAGCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00121	215717	220369	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006811 ion transport

GO:0055085 transmembrane transport

cellular_component
GO:0016020 membrane

molecular_function
GO:0005216 ion channel activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000121s00009718.1	PF00520.26	Ion_trans	144	408	5.60E-18
Glyur000121s00009718.1	PF00027.24	cNMP_binding	512	606	3.50E-05

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.595
SRR1783600	control	3.605
SRR1783602	moderate drought stress	2.737
SRR1811619	moderate drought stress	2.702

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.358
DRR006520	Root Summer glycyrrhizin high producing strain	6.398
DRR006521	Root Winter glycyrrhizin high producing strain	7.132
DRR006522	Root Winter glycyrrhizin high producing strain	7.155
DRR006523	Root Summer glycyrrhizin low producing strain	19.165
DRR006524	Root Summer glycyrrhizin low producing strain	18.512
DRR006525	Leaf Summer glycyrrhizin high producing strain	19.340
DRR006526	Leaf Summer glycyrrhizin high producing strain	19.422

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	15.982
SRR2868004	Drought Stress (root)	36.152
SRR2967015	Control (root)	23.143

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	45.177
SRR9715740	Leaf	38.530
SRR9715741	Leaf	66.945
SRR9715739	Root	2.038
SRR9715742	Root	9.090
SRR9715743	Root	7.224

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.094
SRR8749028	MeJA induced 9h	11.318
SRR8749029	MeJA induced 9h	9.838
SRR8749030	Uninduced	38.988
SRR8749031	Uninduced	35.316
SRR8749032	Uninduced	18.719

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	11.498
SRR8400027	Control - Root	9.245