Gene detail

Gene detail information of Glyur000121s00009713

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G01037.1	7.00E-148	Ubiquitin carboxyl-terminal hydrolase family protein
NR	XP_004494808.1	0	PREDICTED: uncharacterized protein LOC101505854 [Cicer arietinum]
Swissprot	tr\|Q689D6\|RPD1_ARATH	2.00E-45	Protein ROOT PRIMORDIUM DEFECTIVE 1
trEMBL	tr\|G7L432\|G7L432_MEDTR	0	Plant organelle RNA recognition domain protein {ECO:0000313\|EMBL:AES82782.1}

Sequence

Transcript Sequence

>Glyur000121s00009713.1
ATGTCTTCATCATCTACCCCTTTACCCTTGTTCATTTCTAATCGACTCCTTTTCCTTCAAAAACCAAAGCCTCATGTGAAACTCAATTGCTCCTCCCTCCAGAAATCCGAATTTCTGGGGAGTAATTTGCGTATGGTTCCGTCACAGTCACAGGGGAACATTATCAGGCCCAGATTTCAAACTTTGCCGATAAGAGCAGCCGTTAAGAGAAGGAAAGAGATTCCCTTTGATAGCGTTATACAGAGGGAAAAGAAGCTCAAGTTTGTTCTCAGGGTGAGGAAGATTCTGGTGAGTCAACCGGATCGGGTTATGTCGCTCCGGGAGCTGGGTAAGTATAGAAGGGAATTGGGGTTNGATAAAAAGAGGAAATTGATTGCTCTGTTGAGGAAATTCCCTGCTGTGTTTGAGATTATGGAAGAAGGGGTTTACTCTCTCAAATTCAAAATGACCCCNGAGGCTGAAAGGCTCTATTTTGAGGAACTGAGGATTAGGAATGAAATGGAAGATTTGGTGGTTGTCAAGCTTAGGAAGTTGTTGATGATGTCGCTGGAAAAGCGGATATTGCTCGAGAAAATAGCCCATCTGGCCAATGATTTGGGGCTGCCGCGAGAGTTTCGTGAAACCATCTGTCATAGGTACCCACAGTACTTCAAAGTTGTTGAGACTGAACGAGGGCCTGCTCTGGAATTGACACATTGGGATCCTGAGCTTGCAGTTTCTGCGGCCGAGCTATCTGCGGAGGAAAATCGCATTAGAGAATTGGAAGAGCAGAACTTGATCATAGACAGGCCTCCCAAATTCAACAGAGTAAAGCTTCCTAAAGGTCTTAATCTTTCNAAGGGTGAGATGAGGAAGATAATGCAATTCAGAGACTTGCCTTATATCTCGCCTTACTCAGATTTCTCAATGCTTACACCAGGGTCACGGGAGAAAGAGAAGCATGCTTGTGGAGTTGTTCATGAGATTTTGAGTCTCACTCTTGAGAAGCGAACTCTAGTTGATCACTTTACTCATTTTCGAGAGGAGTTCAGGTTTTCTCAGCAGCTGAGGGGGATGTTGATAAGGCATCCCGACATGTTTTATGTCTCTCTGAAAGGAGATAGGGATTCTGTGTTCCTGAGGGAAGCTTATCGAGATTCTCAGTTGGTAGACAAGGACAGATTGTTACTCATAAAGGAAAAACTTCGTTCTCTGGTTAATGTTCCACGATTTCCCAAGGGACCTGCTCGCACAAGAGTTAGAGATGCAGATGGCGCGGAAGAGGAAGAAGATGTTGATAGCAGAGAAGTTGATAGTGGTGAAGAGGAAGAAGAACGGTCNGATGTTGATAATTTTACAAATGAAGATGATGATGATGATGACATGGATGATGACTGGAGTGATGAATATGATGATGATGATGATACACCACCAGATTTTGATGAGGAAGCTGGAACGTTGGAGATTGAACAAGGAAAGACAATTAAACAAGTTCAAGACACAAGACAGAATAATGAAAAGGTCCTTGTTCCTACATTCTGTGATGGTCGCCCCAGAGAACGGTGGTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00121	180978	182525	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000121s00009713.1	PF11955.3	PORR	71	403	3.80E-116

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.385
SRR1783600	control	6.813
SRR1783602	moderate drought stress	6.392
SRR1811619	moderate drought stress	5.436

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.522
DRR006520	Root Summer glycyrrhizin high producing strain	6.431
DRR006521	Root Winter glycyrrhizin high producing strain	3.873
DRR006522	Root Winter glycyrrhizin high producing strain	4.033
DRR006523	Root Summer glycyrrhizin low producing strain	8.108
DRR006524	Root Summer glycyrrhizin low producing strain	7.981
DRR006525	Leaf Summer glycyrrhizin high producing strain	9.556
DRR006526	Leaf Summer glycyrrhizin high producing strain	9.780

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.133
SRR2868004	Drought Stress (root)	5.477
SRR2967015	Control (root)	5.774

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	17.170
SRR9715740	Leaf	18.124
SRR9715741	Leaf	17.094
SRR9715739	Root	6.263
SRR9715742	Root	12.382
SRR9715743	Root	10.194

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.873
SRR8749028	MeJA induced 9h	3.234
SRR8749029	MeJA induced 9h	2.065
SRR8749030	Uninduced	0.473
SRR8749031	Uninduced	0.325
SRR8749032	Uninduced	0.537

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.110
SRR8400027	Control - Root	7.159