Gene detail

Gene detail information of Glyur000121s00009711.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G03300.2	1.00E-158	dicer-like 2
NR	XP_006604892.1	0	PREDICTED: endoribonuclease Dicer homolog 2 isoform X2 [Glycine max]
COG	YP_001359556.1	1.00E-16	ribonuclease III [Sulfurovum sp. NBC37-1]
Swissprot	tr\|Q3EBC8\|DCL2_ARATH	0	Endoribonuclease Dicer homolog 2
trEMBL	tr\|I1NCK3\|I1NCK3_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA19G44390.1}

Sequence

Transcript Sequence

>Glyur000121s00009711.1
GAAATAAGCAACCCGTTTATGTCCCATCCCAGAAAAAAAATTGTTCATCAAATACTTGCAATGTAATGTACCATTGCTATTTGATGGAGCTGAAAAAAAATTTCAACAACAATGATGTATCGGTTCATGACATTGTGCTTGCAATTAGGAGTAAAAAAAACCCAGAAATCACAGGCACGCCATTTGGGATGTGTGTTGACAGGGGCAACTTGAAAAAAAATCTCACACATGTAGACACCATTCGTCTTAGCCCACATGAGGTTGAAGAATGTAGAAGATTTCAGACCACCCTCTTCAGGATCCTTCTGCGTGGGGAAGTGAACAAGCTACCAAGTGTTTCGGATGAGTTTTGTTTGGGAGATAATAATCCTGAGATTGATTATCTTCTGCTTCCGGCCACTGTTAAAAACCAGAGACCTTCAAATTCAATTATTGATTGGAAGTCTATTTCTTCTGTTCCCTGTGAGTGCAAGGATGATGATGCTCGTGTGTGGACCAAAAGTGGCCTAGTTTGCTCTTGCAAACTTAAAAATTGTGTGGTCTCTACTCCTCAAAAAAAATTAATTTATATCATTAATGGTGCAATGGAATTGAATGGAAACTCACCTCAACTACACCTAAGAGGTAAAGGAGCTACTACTTACAAGGAGTACTTCAAAAACCACCACGGGATTGATTTGCATTTTGAGCACCAATCCCTACTTCGTGGAAGGAGTGTTTTTAAAGTGATAAATTACCTTCAGAAGGGCAGAAAAAAGAAGAAAGGACCAAGCATGTACTCTGTTGAATTGCCACCAGAACTTTGCTCTGTAATCATGTCACCAATATCAATCAACACCATATACTCATTTTCATTTATTCCATCAATCATGCATCGGATTGAGTCTTTGCTTGTTGCTTTCAACTTAAAAAAGATGCTTTTGGATCATTGCACGCAAAATGATATCCCTAAAAAAAAGGTATTGGAAGCAATCACTGCAAAGGAATGTCAAGAGGACTTCGATTATGATTCCTTAGAGACACTTGGAGATTCTTTTCTTAAGTATGTTGCTAGCCAGCAGCTTTTCAAAACCTATCAAAATTATCGCGAAGGTCCTCTTACCGAAGAGAGGAAGAAGATGATTTCCAATGATGCCTTGTTTGATTATGGGTGTAGCCACAAACTCCCGGGATTCATACAAAAAAAATTTTTTAAGCCAAAAGAGTGGATTGTACCCGGCGATGATAAGTCAAAAAATATAAAAAAAAAAGAAGAGTTGGTTTCGAGTAGAACAAGAGTATATGTTCATAGAACAAGAAAAAAAAAACTAAAGGTAGTAGCTGATGTTGTTGAGGCACTAATTGGTGCCTTCCTTAGCACAGGAGATGAAGAAGCTGCTTTATCCTTTATTAACTGGAATGGCATCAAGATTGACACTAAAAAAAAACCATATGAGAGGCACCTTAGCATTGCCCCGGAGAAGCTTGTAAAAGTCAACCATTTAGAATCCCTATTGAACTACTCATTCCATGACCCTTCCCTTTTATTAGAAGCTCTGACAAAAAAATCTTACAAGCGGCCAGAAATTCCAGGATGTTATAATTATCAGCGACTAGAGTTTCTTGGCGATGCAGTGTTGGACTATCTCATAACGGTGCATTTCTACAATACATATCCTGCAGACAAGTTGTCATCAGAATTGTTGACTGACATGAGGTCTATTTCTGTGAATAATGAGTGTTACGCGCTGTCAGCCGTTAGAGCTAAGCTGCATGAACACATACTCTGCGACTCGGAAGTCAAAAAGAAAATCGCAGCCACTGTACTTGCAGATGTTATAGAATCTATAGAAAAAAAGATTTATATTGACTCAGGGTACAAGAAGGAGGTTGTTTTCCANAGCATAAGGCAAAAAAAGGAACCACTGGTTACACCTGAAACTGCAAAACAACATCCTATTCGGGAGTTGAAAGAGCTATGCCAAAAAGAACACTATAAAATGGAAGAAACCGTGGTGTCCCATGACAACGGTGTTACTTCAGTTACAATCGAGGTGAAAGTTGATAGAACCACTTACAAGGAAACTGCAGAAAAAAATAATAAGACGACAGCTCAGAAACTAGCCTCCAAGGAAGTTTTAAAGCTCTTGAAAAAAAACAATGCTAAGTTGTCGATGAAGAGCAGGCGATTTTTGTTCCCTTTACTATCTGTAGTCTTCTTGTTCTGTTGGTTTGTAAATGAGATAATTTATCATGTAGTATGCAAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00121	174261	178248	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K11592	DICER1, DCR1	EC:3.1.26.-	MicroRNAs in cancer	map05206

Gene Ontology

biological_process
GO:0006396 RNA processing

molecular_function

GO:0003723 RNA binding

GO:0004525 ribonuclease III activity

GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000121s00009711.1	PF02170.17	PAZ	153	274	2.80E-07
Glyur000121s00009711.1	PF00636.21	Ribonuclease_3	316	431	1.70E-21
Glyur000121s00009711.1	PF14622.1	Ribonucleas_3_3	483	600	3.40E-13
Glyur000121s00009711.1	PF00035.20	dsrm	624	688	2.30E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.303
SRR1783600	control	6.026
SRR1783602	moderate drought stress	3.996
SRR1811619	moderate drought stress	4.023

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.968
DRR006520	Root Summer glycyrrhizin high producing strain	3.462
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	5.210
DRR006524	Root Summer glycyrrhizin low producing strain	5.505
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.852
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.599

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.893
SRR2868004	Drought Stress (root)	3.654
SRR2967015	Control (root)	4.381

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.948
SRR9715740	Leaf	2.941
SRR9715741	Leaf	3.687
SRR9715739	Root	0.105
SRR9715742	Root	7.551
SRR9715743	Root	5.770

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.610
SRR8749028	MeJA induced 9h	4.221
SRR8749029	MeJA induced 9h	3.476
SRR8749030	Uninduced	0.043
SRR8749031	Uninduced	0.131
SRR8749032	Uninduced	0.157

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.887
SRR8400027	Control - Root	2.168