Gene detail

Gene detail information of Glyur000121s00009702

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G01430.1	1.00E-127	TRICHOME BIREFRINGENCE-LIKE 25
NR	XP_003553780.1	0	PREDICTED: protein YLS7-like isoform X1 [Glycine max]
Swissprot	tr\|Q84JH9\|TBL25_ARATH	1.00E-166	Protein trichome birefringence-like 25
trEMBL	tr\|I1NCJ2\|I1NCJ2_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA19G44340.1}

Sequence

Transcript Sequence

>Glyur000121s00009702.1
ATGGTCAAGGGAATGCGGTGTGATTTGAGCCCGTTCTTGTCCCTGCAGAAACACAACCACNATGTCTTCCTCACGTTGGCAGTGTCGTGTCTCTTGGTGGGTCTCGCTTTCCGCCTCTTCTTCACCGATTCATTTGGCTTCTCATCTCTGCTGCAAACAACAACAACTCTTGAAAATGCAATAGCAGATTCACCCGTTATTTCTTTTCCCTCTCACACAACTGATGATGATTCAGTTGATTCTCACACAAACCAGAGCCAAACCCCTCCCACAGTAAAATGTGATCTTTTTGTGGGAGAATGGGTGCGGGACCTATCTGGTCCAATGTACACTAATGAGAGCTGNCATGTGATTGAAGATCATCAAAACTGTATGAGGAATGGACGGCCTGATTCAGGGTACCTTTACTGGAGGTGGAACCCAAGGGGCTGTGTATTACCTAAGTTCAGTCCAAGGAAGTTCCTTCACATTATGAGGAATAAATCATGGGCCTTCATTGGTGATTCCATCTCCCGCAACCACGTGCAATCTCTACTTTGCATTCTCTCACAGGTGGAAGCAGCTGATGAGGTCTACCATGATGAGGAATATAGATCAAAGATATGGAAGTTCCCCTCCCACAACTTCACACTCTCAGTAATATGGACCCCTTTCCTTATTAAAGCAGACATATTTGAGGACATGAATGGAGTTTCCTCCTCAGAGATACAGCTCTATCTTGACACACTAGACAGCAAATGGACCAATCNATACAATAATTTCGATTATGTCGTGATGGCCGGTGGCAAATGGTTTCTCAAGACTTCAATATACCANGAAAACGGCACGGTCACAGGCTGCCACTACTGCCCTGGAAAGAATTTNACAGANCTAGGATTCGACTACGCATACCGCAAAGCACTGCAGCTGGTTTTTGATTTTGTGACAAACTCTAACTCTAACCACAAAGCCATTGTNTTCTTCAGAACCACCACACCAGACCANTTTGAGAATGGGGANTGGTTCAGTGGAGGGTACTGCAACAGNACAGTACCCTTCAAAGAGGATCAGATNGGTATCAGTGATGCAGATTCAGCCATGAGGGGTATTGAAGTTGAAGAGTTTGACAAGGCTGCAAGAGCCACATCCCTTGGTGGTGAAAACTTGAAACTTTTAGACACAACTCGCCTCTCACTGTTGAGGCCTGATGGGCATCCAGGACCATACCGCCAGTTTCACCCATTATTGCCAAATAATGCTGAAGTCCAGAATGATTGTCTGCATTGGTGTTTGCCAGGACCCATTGACTCCTGGAACGACATACTAATGCAAATGCTGTGATCATTTATTATGCAAGTATCCCTGCCAATTCTTCTTACAACTTGAATAGGATTGAACACATACCACATGAAATTAGGATTAGACTGAGTTGAAGAGAACCAAATAACCTTTGCAATTATTGTATGCAGCGTGTGAACATGGGCATAGGCAAACCATATACAGAACAGCACCATTTGGACATTGCACCTAGCCACCTACCCTCCCC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00121	131097	134040	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000121s00009702.1	PF14416.1	PMR5N	93	144	1.50E-20
Glyur000121s00009702.1	PF13839.1	PC-Esterase	146	439	1.80E-66

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.262
SRR1783600	control	0.243
SRR1783602	moderate drought stress	0.224
SRR1811619	moderate drought stress	0.241

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.419
DRR006520	Root Summer glycyrrhizin high producing strain	7.620
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	1.913
DRR006524	Root Summer glycyrrhizin low producing strain	1.998
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.975
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.967

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.479
SRR2868004	Drought Stress (root)	3.569
SRR2967015	Control (root)	1.222

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.176
SRR9715740	Leaf	0.208
SRR9715741	Leaf	0.449
SRR9715739	Root	0.000
SRR9715742	Root	0.391
SRR9715743	Root	0.496

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.426
SRR8749028	MeJA induced 9h	0.328
SRR8749029	MeJA induced 9h	0.877
SRR8749030	Uninduced	0.091
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.923

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.273
SRR8400027	Control - Root	0.297