Gene detail

Gene detail information of Glyur000121s00009697

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT3G61650.1	gamma-tubulin
NR	XP_004494797.1	PREDICTED: tubulin gamma-1 chain-like isoform X1 [Cicer arietinum]
Swissprot	tr\|P38557\|TBG1_ARATH	Tubulin gamma-1 chain
trEMBL	tr\|G7L416\|G7L416_MEDTR	Tubulin gamma chain {ECO:0000256\|RuleBase:RU003506}

Sequence

Transcript Sequence

>Glyur000121s00009697.1
AGAGATTGGTAGTAACTAGTACCAGTAAGGATTAGCACTAGCAGCAGGAGCAACGAGGATGAGTGAGTAAAGTGAGTGTTAAGCAAAGGCAAAGGCATCATTTCACACAATCACANCCGTTCTCTTAATTTTCTGGTTGACTCTCATCCACAGAACAGAGAGTGTTAGTGTTGAGTGTTATTGTTTGAAAAAGAGTGTTTCCCTCCCCCGCCACGAAACCCTAGTTGAGAGGAAAAAATGCCGAGGGAAATCATCACTCTCCAGGTTGGGCAATGCGGCAACCAGATCGGCATGGAATTCTGGAAGCAGCTCTGCCTCGAGCATGGCATCAGCAAAGACGGCATCCTCGAAGACTTCGCCACTCAGGGAGGAGATAGGAAAGATGTGTTCTTCTATCAAGCTGATGATCAGCATTATATACCACGAGCTCTACTGATTGACTTGGAGCCAAGAGTTATTAATGGAATTCAAAATAGTGACTACCGAAATCTCTACAATCATGAGAACATCTTTGTCTCAGATCATGGTGGTGGTGCAGGAAACAATTGGGCCAGTGGATACCACCAGGGAAAGAATGTTGAAGAAGACATAATGGACATGATTGACAGAGAAGCAGATGGTAGTGACAGTCTTGAGGGTTTTGTTCTATGTCACTCAATTGCTGGAGGAACGGGCTCAGGTATGGGCTCATACTTGTTGGAGACTTTGAATGACCGCTACAGCAAAAAACTGGTTCAGACATACAGTGTGTTTCCTAACCAAATGGAGACAAGTGATGTGGTGGTCCAACCATACAATTCACTTTTGACACTCAAGCGACTAACTCTTAATGCAGATTGTGTTGTGGTTCTTGACAATACTGCGCTAAATAGAATTGCTGTGGAAAGACTTCATTTATCAAATCCAACATTTGCTCAAACAAATTCCTTAGTTTCTACTGTGATGTCTGCCAGCACAACCACTCTTCGCTATCCAGGATACATGAATAATGACTTAGTTGGTCTTCTTGCCTCTTTGATTCCAACACCAAGATGCCATTTTCTAATGACAGGATATACGCCTCTGACAGTGGAACGTCAGGCTAATTTAATTCGTAAGACCACTGTACTTGACGTTATGAGAAGACTTCTGCAGGCAAAGAATATTATGGTATCTTCTTATGCACGAACCAAAGATGCTAGCCAAGCAAAATATATATCAATTCTGAATATCATCCAAGGAGAGGTTGACCCAACTCAGGTTCATGAAAGTTTGCAGAGGATACGTGAAAGAAAGCTAGTTAACTTTATTGAGTGGGGTCCTGCAAGTATTCAGGTTGCTCTATCCAGGAAGTCACCATACGTTCAAACTGCACACAGGGTCAGTGGCCTTATGCTGGCTAGCCATACTAGCATTCGTCACCTTTTCAGTAAATGTTTGAGCCAATATGAGAAGTTGAGAAGGAAACAAGCCTTTCTAGACAACTACCGAAAGTTCCCAATGTTTGCTGATAATGACCTCTCAGAATTTGATGAATCAAGAGACATAATTGAGAGTTTGGTTGATGAGTATAAGGCCTGTGAATCCCCGGATTATATCAAATGGGGAATGGAGGATCCGAATAATATGCTAACAGGAGAAGGCAATGCTACAGGATCACTGGATCCAAAATCAGGAGTGTGAGGAAACCAANGACTACAACAAGGGGGGAGAGAGGAAAGGATTTTGTGTAAGATCAGCACGGNCTCTAATGAAAAACTTTTTCAACATTTTAGGGGCATCCGATGGTTTGCAGTGTGATCATTTTTGGTTTGNATTGTTTGTTTATCATTTGCATTTGGACATCCACCCAAGGGAGATCGAGTACAGAATCTCACTGTATTGATTCATTTTCAGCAATGTATATGGTTGGTTAGCGAGAGGGATGAAAAATCGTAATATNTGGAGTTGCAACATGAATAGGAAGATATTACCAAAAATTGAAGAAATATAAAAACATGATAATACAAGCAACTTATCAACAAGTAAGATTGAGATTGCGATCTTCACTACCTCGTTGGCACGTTGAGAGAATTAGGGATCCTGGTTTTATTATCCAGATCTGAGGTGTTTGTTTGGCAATCTTGCTGTCACTTTAGGTTGAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00121	79668	85012	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0007017 microtubule-based process

GO:0007020 microtubule nucleation

GO:0031122 cytoplasmic microtubule organization

GO:0051258 protein polymerization

cellular_component

GO:0000930 gamma-tubulin complex

GO:0005874 microtubule

GO:0043234 protein complex

molecular_function

GO:0003924 GTPase activity

GO:0005525 GTP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000121s00009697.1	PF00091.20	Tubulin	4	226	4.50E-75
Glyur000121s00009697.1	PF03953.12	Tubulin_C	264	394	1.50E-47

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	21.200
SRR1783600	control	20.961
SRR1783602	moderate drought stress	14.473
SRR1811619	moderate drought stress	14.062

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	23.773
DRR006520	Root Summer glycyrrhizin high producing strain	23.791
DRR006521	Root Winter glycyrrhizin high producing strain	10.267
DRR006522	Root Winter glycyrrhizin high producing strain	10.155
DRR006523	Root Summer glycyrrhizin low producing strain	15.600
DRR006524	Root Summer glycyrrhizin low producing strain	15.156
DRR006525	Leaf Summer glycyrrhizin high producing strain	13.203
DRR006526	Leaf Summer glycyrrhizin high producing strain	13.049

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	27.791
SRR2868004	Drought Stress (root)	18.799
SRR2967015	Control (root)	20.711

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.162
SRR9715740	Leaf	10.037
SRR9715741	Leaf	9.491
SRR9715739	Root	2.518
SRR9715742	Root	11.250
SRR9715743	Root	8.067

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	26.852
SRR8749028	MeJA induced 9h	15.793
SRR8749029	MeJA induced 9h	11.972
SRR8749030	Uninduced	3.946
SRR8749031	Uninduced	1.796
SRR8749032	Uninduced	1.396

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	35.054
SRR8400027	Control - Root	32.193