Gene detail

Gene detail information of Glyur000121s00009693

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G61610.1	9.00E-146	Galactose mutarotase-like superfamily protein
NR	XP_004494784.1	0	PREDICTED: putative glucose-6-phosphate 1-epimerase-like isoform X1 [Cicer arietinum]
COG	YP_002355684.1	2.00E-63	aldose 1-epimerase [Thauera sp. MZ1T]
Swissprot	tr\|Q40784\|AAPC_CENCI	5.00E-149	Putative glucose-6-phosphate 1-epimerase
trEMBL	tr\|V7BMQ4\|V7BMQ4_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW19264.1}

Sequence

Transcript Sequence

>Glyur000121s00009693.1
ACAACATGTGTGTTCATGTACTTCTCGTATGTCCACGTCCTAGAGTAGATCTCTTCAGTAGCCANCATATACAATTTACAAAAACCGGTTTTTCCTCCTTATCTTCAGCTTCTGCGTAAATTTTTATTTTATTTTATTATCTACCCCCACATTCCCATCTTCCCACGATATTGCCACCTACCAGTTGCTGTAGTTTTTTCAAATCTTGGGTTGGTTGAAAGTTTTGAACTTTTCTTGATTCCCTTGCAAGTCTGGTGTTGAATGAATACTTCTAAGAAAAGGTTGTTGAACAGGTATTGCTTCTTGTCATTGGATGTGTGGATTCCTGAACCCATTTGAAAGCGGTCATGCATTATTGTGGCTCCTCTACCTCCTCCATCTTTTTGAATCCAAGTCCTGGTGTCAGTTTGCTGGTTCTGTTACAATTCCTGGTTCAAAATTGTTAAAAGCTTAGGATTCCCTAGATCTGAATCATACCAGTGTGAGGAGAGATTAGTATAGGTGTGGANTGGATTCCCCTTCAATCGCTGGGCATTGGTGTGTGCCGAATTTGAGAAGCTTATTGGGGTTTGTTTGGGGAGTAGAGAAGTAGAGGACCTAAACTATTTTTGATGGGGCATTCTGCAGCTGTGTGGGACTTTAGAGCAGCAACTGAAATTGCAAAGGACTGGAATGGAATTGATCAAATTGTGCTTCGGACCCCACAGGGCGCTTCAGCACGGGTAAGCTTACATGGAGCACAGGTCACTTCATGGCGTAATGAGCAGGGGGAAGAACTTCTATTCACAAGCAGCAAGGCAATTCTCAAGGCACCAAAAGCTATACGAGGAGGAATTCCTATATGTTTTCCACAGTTTGGAAACTGTGGATCACTGGAGCTGCATGGATTTGCAAGAAATAGAATGTGGGCAATTGATGAAAATCCTCCTCCTCTGCCTGCAAATGATTCCAGTGGGAAATCCTTTGTTGACCTGCTACTCAAATCATCTGAAGAAGACACAAAGTGCTGGCCACATAGTTTTGAGTTCCGCCTTCGGGTGTCTCTTACGACAGATGGAGGCCTGACTTTGATATCACGAGTCAGGAATGTCAATGGCAAGCCACTTAGTTTCTCATTCGCATATCACACGTACTTGTTGGTTTCTGACATTAGTGAGATAAGGATTGAAGGTCTGGAGACGCTTGATTACCTGGACAACCTTTCCCAAAAAGAACGATTTACAGAACAAGGAGACGCGATAACATTTGAATCCGAGGTGGATCGTGTTTATCTCNGCTCTCCAAATATAATCGCGGTTCTAGACCATGAGAGGAAACGGACATATGTTATAAGAAAGGAAGGTCTCCCTGATGTCGCCGTGTGGAACCCGTGGGAGAAGAAATCAAAGTCAATGGTGGACTTTGGCGATGAGGAGTACAAACAGATGCTTTGTGTTGATGGGGCAGTGATAGAGAAACCTGTGAACTTGAAGCCTGGAGAGGAATGGACAGGGAGGCTGCAACTCTCAGTTGTGCCATCAAGTTTTTGTAGTGAGCGTCTGGGTCTCGAGAGAAGTGGTCTTTGAGGAATTGTNCAAAATCTTATCAGTTTATGTTACATTCATCAATGTAGCATTAAGTTGTAGAGAATAGTGCTTTGTAGGAGTGTGAGGTTTTCTGTTGTGATTTCNGGCTAGAAATACTACTAGTAAAAAATGCAAAAGCCTATGTTTTTTTGAAAAATGGCTGTCACTGAAATTTCGGACTATTTAAATATTTTGTGGAATTTCGGAGGTACTAACCATATTGGCATCCATAAATTCTAAAAAAATGGTACAAAACATCACTTTCTGCAAGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00121	56397	60939	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01792	E5.1.3.15	EC:5.1.3.15	Glycolysis / Gluconeogenesis	map00010
			Glycolysis / Gluconeogenesis	map00010

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function

GO:0003824 catalytic activity

GO:0016853 isomerase activity

GO:0030246 carbohydrate binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000121s00009693.1	PF01263.15	Aldose_epim	24	298	2.80E-66
Glyur000121s00009693.2	PF01263.15	Aldose_epim	24	298	2.80E-66

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	22.132
SRR1783600	control	22.143
SRR1783602	moderate drought stress	25.372
SRR1811619	moderate drought stress	24.890

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	30.456
DRR006520	Root Summer glycyrrhizin high producing strain	30.861
DRR006521	Root Winter glycyrrhizin high producing strain	34.199
DRR006522	Root Winter glycyrrhizin high producing strain	33.857
DRR006523	Root Summer glycyrrhizin low producing strain	32.146
DRR006524	Root Summer glycyrrhizin low producing strain	32.058
DRR006525	Leaf Summer glycyrrhizin high producing strain	17.345
DRR006526	Leaf Summer glycyrrhizin high producing strain	16.660

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	24.008
SRR2868004	Drought Stress (root)	13.527
SRR2967015	Control (root)	15.934

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.424
SRR9715740	Leaf	10.000
SRR9715741	Leaf	6.097
SRR9715739	Root	10.826
SRR9715742	Root	22.246
SRR9715743	Root	19.234

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	19.566
SRR8749028	MeJA induced 9h	8.006
SRR8749029	MeJA induced 9h	9.359
SRR8749030	Uninduced	5.148
SRR8749031	Uninduced	3.748
SRR8749032	Uninduced	4.071

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	51.437
SRR8400027	Control - Root	48.024