Gene detail

Gene detail information of Glyur000121s00009689

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G01130.1	1.00E-132	GDSL-like Lipase/Acylhydrolase superfamily protein
NR	XP_004494780.1	0	PREDICTED: GDSL esterase/lipase At4g01130-like [Cicer arietinum]
COG	YP_003886285.1	7.00E-14	G-D-S-L family lipolytic protein [Cyanothece sp. PCC 7822]
Swissprot	tr\|Q9M153\|GDL61_ARATH	2.00E-159	GDSL esterase/lipase At4g01130 (Precursor)
trEMBL	tr\|I3T1H0\|I3T1H0_MEDTR	0	Uncharacterized protein {ECO:0000313\|EMBL:AFK46362.1}

Sequence

Transcript Sequence

>Glyur000121s00009689.1
ATGAAGAGTACTTTTCTTGAGGTCTCGTGGATAGTTTGGAAGTTCATATTGGTTTGCACGGTGTTGATATCTTCATTGGTGGGTCCAAGTAAATCAGCGTGTGAATTTGATGCAATATTCAACTTTGGGGATTCAAATTCGGACACCGGCGGGTTTAATGCGGCATTTCCCGCACAGGGTNGTCCCTTTGGAATGACTTACTTCAAGAAACCTGTAGGACGCTCATCCGATGGGAGGCTCATTGTGGATTTTTTGGCACATGCTCTTGGGTTGCCATTTCTGAGCCCATATCTGCAATCCATTGGATCTAACTATAGACATGGGGCTAACTTCGCAACTGCAGCCTCCACCGTGCTTGAGCCCACTGTTTCTTTGTATGTTGGTGGGCTTAGCCCCTTTTCCCTCGATATCCAGCTAAGGCAAATGGAGCAATTCAAAGCCAGAGTCGAAGAATTTTATCAACAAGGTAGTAGAAGGTTGCCCTATGGTTGCTCCTTGGGAGCGAATCTCCCTCCCCCGGATATCTTTGGAAAATCCATTTATACATTCTATATTGGCCAAAATGACTTTACTGCCAAACTAGCAGCCAATGGCTTAGGTGGAGTGAGGGATTACATGCCTCAAGTCATCTCACAAATTGATGCCGCTNTTAAGGAGCTATACATACATGGTGGGCGTACATTTTTGGTATTCAATCTTGCCCCCGTGGGGTGCTATCCTGGATTCTTGGTGCAGTTTCCTCACGACATTTCAGATATTGATGAGTTTGGGTGCATGGTCTCTTACAACAACGCTGTAGATGATTATAATAAACTTCTGAAGGAGACTTTGGGACAAAGCAGAGAAATTCTCAAGGGTGCTTCACTCATTTATGTGGACACCCACTCTGCTCTCTTGGAACTCTTCCGCCATCCCACATCTCATGGGCTAAAGGATGGCACTAAAGCGTGTTGTGGGCATGGAGGCGGTGATTACAACTATAACCCTAAAATTTTGTGTGGTAATATGGCTGCAAGTGCCTGCGATGACCCACAAAACTATGTGAGCTGGGATGGCATCCATTTCACTGAAGCTGCAAACAAGCTCGAAAAAAAAGCTCATAGTCACACCTACTACAGCCTCAGTGCTAGCTTCAGTGCCTTTAAGCTCTCAAAAATGAGTTCAAGCACACCTATAATCAAAATCTTGGTCATTTTCATGTTTGTGTTGCCTTGCTTGGTATGTTTAAGTCATGCTGAGTGTGAATTCAAGGCAATCTTCAACTTTGGGGATTCAAATTCAGATACTGGTGGCTTCTTTGCAGCTTTTCCTGCACAGTCTGGTCCGTTCGGAATGACTTACTTCAACAAACCAACTGGCCGGGCTTCGGATGGCAGACTCATTGTCGATTTTCTTGAATCTGATTATAAACATGGGGCCAACTATGCAACACTGGCATCCACTGTGCTTCTGCCTAATACTTCTTTGTTTGTTACCGGGATCAGCCCTTTCTCCCTTGCTATCCAGCTCAACCAAATGAAGCAATTTGCAACCAAAGTTAATCAAGCTGGTCAACAAGATACCAAACTTCCTTCGCCTGATATATTTGGAAAATCTCTTTATACATTCTATATTGGCCAAAATGATTTTACTTCCAACTTAGCAGCCATTGGCATAGGTGGAGTGCAGCAATACCTCCCTCAAGTTGTTTCACAAATTGCTGGCACCATTAAGGAGCTATATAATCTTGGTGGGCGAACATTTTTGGTGCTTAATCTTGCACCAGTGGGATGCTACCCTGCATTCTTGGTGGAGCTTCCTCATGATGGTTCAGACATTGATGAATTTGGATGCATGGTTTCTTACAACAATGCGGTGGTGGACTACAACAACATGTTGAAAGAGACATTGAAACAAACCAGACAAAGTCTCTCGGATGCTTCTGTCATTTATGTGGACACCCATTCTGTTCTGTTGGAGCTCTTCCAGCATCCTACTTCTCATGGTCTTAAGTATGGTACAAAAGCATGTTGTGGATATGGAGGGGGTGACTACAACTTCAATCCTAAAGTTTACTGCGGCAACACCAAGGATATAGATGGCAAAACAGTGACAGCAACAGCATGCGGTGACCCTTACAACTATGTGAGTTGGGATGGGATCCATGCCACAGAAGCAGCAAATAAGCTTACAACCTATGCTATTCTTAATGGATCCTATTCTGATCCTCCTTTCCCATTTCAGGAGCACTGTGATCTTCAACCTATNGGTTGATCCATCTCCTTCAGGGATGTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00121	28152	34992	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0016788 hydrolase activity, acting on ester bonds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000121s00009689.1	PF00657.17	Lipase_GDSL	39	361	9.60E-37
Glyur000121s00009689.1	PF00657.17	Lipase_GDSL	419	725	2.40E-42

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.385
SRR1783600	control	1.304
SRR1783602	moderate drought stress	0.965
SRR1811619	moderate drought stress	0.980

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.148
DRR006520	Root Summer glycyrrhizin high producing strain	1.181
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	2.525
DRR006524	Root Summer glycyrrhizin low producing strain	2.582
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.835
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.687

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.938
SRR2868004	Drought Stress (root)	2.521
SRR2967015	Control (root)	2.101

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.602
SRR9715740	Leaf	1.656
SRR9715741	Leaf	2.326
SRR9715739	Root	0.944
SRR9715742	Root	1.086
SRR9715743	Root	1.172

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.375
SRR8749028	MeJA induced 9h	2.595
SRR8749029	MeJA induced 9h	4.192
SRR8749030	Uninduced	0.581
SRR8749031	Uninduced	0.046
SRR8749032	Uninduced	0.297

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.509
SRR8400027	Control - Root	1.512