Gene detail information of Glyur000121s00009688 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G01150.1 | 3.00E-40 | |
| NR | XP_004494779.1 | 8.06E-58 | PREDICTED: uncharacterized protein At4g01150, chloroplastic-like [Cicer arietinum] |
| COG | YP_007118737.1 | 2.00E-12 | glutamyl-tRNA synthetase [Oscillatoria nigro-viridis PCC 7112] |
| Swissprot | tr|O04616|CUT1A_ARATH | 3.00E-50 | Protein CURVATURE THYLAKOID 1A, chloroplastic (Precursor) |
| trEMBL | tr|I3SDS2|I3SDS2_LOTJA | 7.00E-55 | Uncharacterized protein {ECO:0000313|EMBL:AFK38414.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00121 | 26720 | 27819 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000121s00009688.1 | PF14159.1 | CAAD | 16 | 99 | 4.40E-31 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.046 |
| SRR1783600 | control | 5.426 |
| SRR1783602 | moderate drought stress | 4.048 |
| SRR1811619 | moderate drought stress | 3.935 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.663 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.439 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 9.199 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 8.911 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.469 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.172 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 462.775 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 460.074 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 13.773 |
| SRR2868004 | Drought Stress (root) | 10.966 |
| SRR2967015 | Control (root) | 4.624 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 531.313 |
| SRR9715740 | Leaf | 469.308 |
| SRR9715741 | Leaf | 437.307 |
| SRR9715739 | Root | 3.748 |
| SRR9715742 | Root | 6.043 |
| SRR9715743 | Root | 4.265 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 16.065 |
| SRR8749028 | MeJA induced 9h | 4.221 |
| SRR8749029 | MeJA induced 9h | 5.729 |
| SRR8749030 | Uninduced | 6.663 |
| SRR8749031 | Uninduced | 0.816 |
| SRR8749032 | Uninduced | 5.238 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 19.527 |
| SRR8400027 | Control - Root | 20.724 |