Gene detail information of Glyur000121s00009686


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G04520.12.00E-52Nucleic acid-binding, OB-fold-like protein
NRXP_003528819.11.88E-92PREDICTED: eukaryotic translation initiation factor 1A-like [Glycine max]
COGYP_004035139.12.00E-15translation initiation factor 1a (aeif-1a) [Halogeometricum borinquense DSM 11551]
Swissprottr|P56331|IF1A_ONOVI2.00E-90Eukaryotic translation initiation factor 1A
trEMBLtr|I1KI08|I1KI08_SOYBN7.00E-93Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA07G06680.1}

Sequence

Transcript Sequence
Protein Sequence


Location information (JBrowse)

ScaffoldStartEndStrand
Scaffold001211482915345-


Gene family

Gene familysubfamily
----


KEGG pathway

KOEnzymeEnzyme IDpathwaymapID
----------


Gene Ontology

biological_process

GO:0006413  translational initiation


molecular_function

GO:0003723  RNA binding

GO:0003743  translation initiation factor activity



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000121s00009686.1PF01176.14eIF-1a30945.20E-25


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control194.393
SRR1783600control198.265
SRR1783602moderate drought stress238.503
SRR1811619moderate drought stress240.356

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain201.209
DRR006520Root Summer glycyrrhizin high producing strain205.019
DRR006521Root Winter glycyrrhizin high producing strain689.078
DRR006522Root Winter glycyrrhizin high producing strain666.379
DRR006523Root Summer glycyrrhizin low producing strain221.268
DRR006524Root Summer glycyrrhizin low producing strain211.950
DRR006525Leaf Summer glycyrrhizin high producing strain123.256
DRR006526Leaf Summer glycyrrhizin high producing strain120.215

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress (root)248.218
SRR2868004Drought Stress (root)291.144
SRR2967015Control (root)282.548

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leaf215.637
SRR9715740Leaf198.932
SRR9715741Leaf203.772
SRR9715739Root374.819
SRR9715742Root315.664
SRR9715743Root312.488

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h227.596
SRR8749028MeJA induced 9h148.014
SRR8749029MeJA induced 9h182.842
SRR8749030Uninduced199.212
SRR8749031Uninduced75.944
SRR8749032Uninduced303.594

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment - Root570.964
SRR8400027Control - Root524.144

© 2021 Resource Institute for Chinese & Ethnic Materia Medica, Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved